Evidence map›Paper›PMID 30504214›Full record

ArticleApplied and environmental microbiology2019

Alternative Biosynthetic Starter Units Enhance the Structural Diversity of Cyanobacterial Lipopeptides.

Jan Mareš, Jan Hájek, Petra Urajová, Andreja Kust, Jouni Jokela, Kumar Saurav, Tomáš Galica, Kateřina Čapková, Antti Mattila, Esa Haapaniemi and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. More than just an eagle killer: The freshwater cyanobacteriumProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Review
  6. Comparative genomics ofFrontiers in microbiology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Discovery of Cyanobacterial Natural Products Containing Fatty Acid Residues*.Angewandte Chemie (International ed. in English) · 2021
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 3 countries.

Jan MarešThe Czech Academy of Sciences, Biology Centre, Institute of Hydrobiology, České Budějovice, Czech Republic.ORCID 0000-0002-5745-7023
Jan HájekThe Czech Academy of Sciences, Institute of Microbiology, Center Algatech, Třeboň, Czech Republic.
Petra UrajováThe Czech Academy of Sciences, Institute of Microbiology, Center Algatech, Třeboň, Czech Republic.
Andreja KustThe Czech Academy of Sciences, Biology Centre, Institute of Hydrobiology, České Budějovice, Czech Republic.
Jouni JokelaDepartment of Microbiology, Viikki Biocenter, University of Helsinki, Helsinki, Finland.
Kumar SauravThe Czech Academy of Sciences, Institute of Microbiology, Center Algatech, Třeboň, Czech Republic.
Tomáš GalicaThe Czech Academy of Sciences, Institute of Microbiology, Center Algatech, Třeboň, Czech Republic.
Kateřina ČapkováThe Czech Academy of Sciences, Biology Centre, Institute of Hydrobiology, České Budějovice, Czech Republic.
Antti MattilaDepartment of Microbiology, Viikki Biocenter, University of Helsinki, Helsinki, Finland.
Esa HaapaniemiDepartment of Chemistry, University of Jyväskylä, Jyväskylä, Finland.
Perttu PermiDepartment of Chemistry, University of Jyväskylä, Jyväskylä, Finland.
Ivar MysterudDepartment of Biosciences, University of Oslo, Oslo, Norway.
Olav M SkulbergNorwegian Institute for Water Research (NIVA), Oslo, Norway.
Jan KarlsenSchool of Pharmacy, University of Oslo, Oslo, Norway.
David P FewerDepartment of Microbiology, Viikki Biocenter, University of Helsinki, Helsinki, Finland.
Kaarina SivonenDepartment of Microbiology, Viikki Biocenter, University of Helsinki, Helsinki, Finland.
Hanne Hjorth TønnesenSchool of Pharmacy, University of Oslo, Oslo, Norway.
Pavel HrouzekThe Czech Academy of Sciences, Institute of Microbiology, Center Algatech, Třeboň, Czech Republic hrouzekp@gmail.com.
University of Helsinki · FICzech Academy of Sciences · CZUniversity of Oslo · NOUniversity of South Bohemia in České Budějovice · CZCzech Academy of Sciences, Institute of Microbiology · CZUniversity of Jyväskylä · FINorwegian Institute for Water Research · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Puwainaphycins (PUWs) and minutissamides (MINs) are structurally analogous cyclic lipopeptides possessing cytotoxic activity. Both types of compound exhibit high structural variability, particularly in the fatty acid (FA) moiety. Although a biosynthetic gene cluster responsible for synthesis of several PUW variants has been proposed in a cyanobacterial strain, the genetic background for MINs remains unexplored. Herein, we report PUW/MIN biosynthetic gene clusters and structural variants from six cyanobacterial strains. Comparison of biosynthetic gene clusters indicates a common origin of the PUW/MIN hybrid nonribosomal peptide synthetase and polyketide synthase. Surprisingly, the biosynthetic gene clusters encode two alternative biosynthetic starter modules, and analysis of structural variants suggests that initiation by each of the starter modules results in lipopeptides of differing lengths and FA substitutions. Among additional modifications of the FA chain, chlorination of minutissamide D was explained by the presence of a putative halogenase gene in the PUW/MIN gene cluster of

Indexed as

AnabaenaAntifungal AgentsAnti-Infective AgentsBacterial ProteinsCyanobacteriaGenes, BacterialLipopeptidesMultigene FamilyPeptides, CyclicPeptide SynthasesPolyketide SynthasesAntifungal AgentsAnti-Infective AgentsBacterial ProteinsLipopeptidesnon-ribosomal peptide synthasePeptides, CyclicPeptide SynthasesPolyketide Synthasesbiosynthesiscyanobacteriafatty acyl-AMP ligaselipopeptidesnonribosomal peptide synthetase

Identifiers

PMID30504214
PMCPMC6365827
OpenAlexW2903207525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.