Evidence map›Paper›PMID 30503706›Full record

ArticleCancer cell2018

A Transcription Factor Addiction in Leukemia Imposed by the MLL Promoter Sequence.

Bin Lu, Olaf Klingbeil, Yusuke Tarumoto, Tim D D Somerville, Yu-Han Huang, Yiliang Wei, Dorothy C Wai, Jason K K Low, Joseph P Milazzo, Xiaoli S Wu and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Bin LuCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Olaf KlingbeilCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Yusuke TarumotoCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Tim D D SomervilleCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Yu-Han HuangCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Yiliang WeiCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Dorothy C WaiSchool of Life and Environmental Sciences, University of Sydney, Camperdown, NSW 2006, Australia.
Jason K K LowSchool of Life and Environmental Sciences, University of Sydney, Camperdown, NSW 2006, Australia.
Joseph P MilazzoCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Xiaoli S WuCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Zhendong CaoDepartment of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Xiaomei YanDivisions of Pathology and Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA.
Osama E DemerdashCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Gang HuangDivisions of Pathology and Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Avenue, Cincinnati, OH 45229, USA.
Joel P MackaySchool of Life and Environmental Sciences, University of Sydney, Camperdown, NSW 2006, Australia.
Justin B KinneyCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Junwei ShiDepartment of Cancer Biology, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: jushi@upenn.edu.
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: vakoc@cshl.edu.
Cold Spring Harbor Laboratory · USUniversity of Sydney · AUCincinnati Children's Hospital Medical Center · USUniversity of Pennsylvania · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
BET bromodomain inhibition as targeted therapy in acute myeloid leukemiaR01CA174793 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2013 to 2023
$5.5M
Next Generation DNA SequencerS10OD020122 · OD · COLD SPRING HARBOR LABORATORY · PI MCCOMBIE, WILLIAM RICHARD · 2015 to 2015
$523k
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NCI NIH HHS R01 CA174793NIH HHS S10 OD020122
6 · The paper itself

Abstract

The Mixed Lineage Leukemia gene (MLL) is altered in leukemia by chromosomal translocations to produce oncoproteins composed of the MLL N-terminus fused to the C-terminus of a partner protein. Here, we used domain-focused CRISPR screening to identify ZFP64 as an essential transcription factor in MLL-rearranged leukemia. We show that the critical function of ZFP64 in leukemia is to maintain MLL expression via binding to the MLL promoter, which is the most enriched location of ZFP64 occupancy in the human genome. The specificity of ZFP64 for MLL is accounted for by an exceptional density of ZFP64 motifs embedded within the MLL promoter. These findings demonstrate how a sequence anomaly of an oncogene promoter can impose a transcriptional addiction in cancer.

Indexed as

Translocation, GeneticA549 CellsAnimalsCell Line, TumorDNA-Binding ProteinsGene Expression Regulation, LeukemicHEK293 CellsHigh-Throughput Nucleotide SequencingHumansK562 CellsLeukemia, Biphenotypic, AcuteMice, Inbred NODMice, KnockoutMice, SCIDMyeloid-Lymphoid Leukemia ProteinOncogene Proteins, FusionDNA-Binding ProteinsMyeloid-Lymphoid Leukemia ProteinOncogene Proteins, FusionTranscription FactorsZFP64 protein, humanaddictionCRISPR screenleukemiaMLLmotifoncogenepromoterZFP64

Identifiers

PMID30503706
PMCPMC6554023
OpenAlexW2902679159

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.