Evidence map›Paper›PMID 30503534›Full record

ArticleBiophysical journal2018

Analysis of NMR Spin-Relaxation Data Using an Inverse Gaussian Distribution Function.

Andrew Hsu, Fabien Ferrage, Arthur G Palmer

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Magnetic resonance letters · 2023
    Review
  2. Article
  3. Article
  4. Bootstrap Aggregation for Model Selection in the Model-free Formalism.Magnetic resonance (Gottingen, Germany) · 2021
    Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Andrew HsuDepartment of Chemistry, Columbia University, New York, New York.
Fabien FerrageLaboratoire des Biomolécules, Département de Chimie, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, Paris, France.
Arthur G PalmerDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, New York. Electronic address: agp6@columbia.edu.

Funding

TR&D4: Integrated pipeline for data analysisP41GM118302 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI PALMER, ARTHUR G · 2017 to 2021
$8.5M
STRUCTURE AND DYNAMICS OF RIBONUCLEASE HR01GM050291 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1994 to 2017
$5.6M
TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
NIGMS NIH HHS P41 GM118302NIGMS NIH HHS R01 GM050291NIGMS NIH HHS T32 GM008281
6 · The paper itself

Abstract

Spin relaxation in solution-state NMR spectroscopy is a powerful approach to explore the conformational dynamics of biological macromolecules. Probability distribution functions for overall or internal correlation times have been used previously to model spectral density functions central to spin-relaxation theory. Applications to biological macromolecules rely on transverse relaxation rate constants, and when studying nanosecond timescale motions, sampling at ultralow frequencies is often necessary. Consequently, appropriate distribution functions necessitate spectral density functions that are accurate and convergent as frequencies approach zero. In this work, the inverse Gaussian probability distribution function is derived from general properties of spectral density functions at low and high frequencies for macromolecules in solution, using the principle of maximal entropy. This normalized distribution function is first used to calculate the correlation function, followed by the spectral density function. The resulting model-free spectral density functions are finite at a frequency of zero and can be used to describe distributions of either overall or internal correlation times using the model-free ansatz. To validate the approach,

Indexed as

Data AnalysisMagnetic Resonance SpectroscopyBasic-Leucine Zipper Transcription FactorsNormal DistributionProbabilityProtein DomainsSaccharomyces cerevisiae ProteinsBasic-Leucine Zipper Transcription FactorsGCN4 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID30503534
PMCPMC6301913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.