Evidence map›Paper›PMID 30503519›Full record

ArticleAmerican journal of human genetics2018

DNA Polymerase Epsilon Deficiency Causes IMAGe Syndrome with Variable Immunodeficiency.

Clare V Logan, Jennie E Murray, David A Parry, Andrea Robertson, Roberto Bellelli, Žygimantė Tarnauskaitė, Rachel Challis, Louise Cleal, Valerie Borel, Adeline Fluteau and 37 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 106 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 20 institutions in 7 countries.

Clare V LoganMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Jennie E MurrayMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK; South East Scotland Clinical Genetics Service, Western General Hospital, Edinburgh EH4 2XU, UK. Electronic address: jennie.murray@igmm.ed.ac.uk.
David A ParryMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Andrea RobertsonMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Roberto BellelliThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Žygimantė TarnauskaitėMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Rachel ChallisMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK; South East Scotland Clinical Genetics Service, Western General Hospital, Edinburgh EH4 2XU, UK.
Louise ClealMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK; South East Scotland Clinical Genetics Service, Western General Hospital, Edinburgh EH4 2XU, UK.
Valerie BorelThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Adeline FluteauMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Javier Santoyo-LopezEdinburgh Genomics Clinical Division, University of Edinburgh, The Roslin Institute, Edinburgh EH25 9RG, UK.
SGP Consortium
Tim AitmanMRC Centre for Genomic & Experimental Medicine, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Inês BarrosoWellcome Sanger Institute, Cambridge CB10 1SA, UK.
Donald BaselMedical College of Wisconsin from Children's Hospital of Wisconsin, Milwaukee, WI 53226, USA.
Louise S BicknellDepartment of Pathology, Dunedin School of Medicine, University of Otago, Dunedin 9016, New Zealand.
Himanshu GoelHunter Genetics, Waratah, NSW 2305, Australia; University of Newcastle, Callaghan, NSW 2308, Australia.
Hao HuDepartment of Epidemiology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Chad HuffDepartment of Epidemiology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Michele HutchisonDepartment of Pediatrics, University of Arkansas, Little Rock, AR 72205, USA.
Caroline JoyceDepartment of Clinical Biochemistry, Cork University Hospital, Cork, Ireland.
Rachel KnoxMRC Metabolic Diseases Unit, University of Cambridge, Cambridge CB2 0QQ, UK.
Amy E LacroixUniversity of Nebraska Medical Centre, Omaha, NE 68918, USA.
Sylvie LangloisDepartment of Medical Genetics, The University of British Columbia, Vancouver, BC V6H 3N1, Canada.
Shawn McCandlessPediatric Genetics, UH Cleveland Medical Center, Cleveland, OH 44106, USA.
Julie McCarrierMedical College of Wisconsin from Children's Hospital of Wisconsin, Milwaukee, WI 53226, USA.
Kay A MetcalfeManchester Centre for Genomic Medicine, Manchester University NHS Foundation Trust and Institute of Human Development, University of Manchester, Manchester M13 9WL, UK.
Rose MorrisseyDepartment of Paediatrics and Child Health, Cork University Hospital, Cork, Ireland.
Nuala MurphyUCD School of Medicine, Children's University Hospital, Temple St, Dublin, Ireland.
Irène NetchineSorbonne Université, INSERM, UMR_S 938, APHP, Hospital Trousseau, 75012 Paris, France.
Susan M O'ConnellUCD School of Medicine, Children's University Hospital, Temple St, Dublin, Ireland.
Ann Haskins OlneyUniversity of Nebraska Medical Centre, Omaha, NE 68918, USA.
Nandina PariaSarah M. and Charles E. Seay Center for Musculoskeletal Research, Texas Scottish Rite Hospital for Children, Dallas, TX 75219, USA.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Mark SherlockDepartment of Endocrinology, Beaumont Hospital, Dublin, Ireland.
Erin SyversonMedical College of Wisconsin from Children's Hospital of Wisconsin, Milwaukee, WI 53226, USA.
Perrin C WhiteDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Carol WiseSarah M. and Charles E. Seay Center for Musculoskeletal Research, Texas Scottish Rite Hospital for Children, Dallas, TX 75219, USA; Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Orthopaedic Surgery, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yao YuDepartment of Epidemiology, MD Anderson Cancer Center, Houston, TX 77030, USA.
Margaret ZacharinDivision of Medicine, Royal Children's Hospital, Melbourne, VIC 3052, Australia.
Indraneel BanerjeeDepartment of Paediatric Endocrinology, Royal Manchester Children's Hospital, Manchester Academic Health Science Centre, Manchester M13 9WU, UK.
Martin ReijnsMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK.
Michael B BoberNemours-Alfred I. duPont Hospital for Children, Wilmington, DE 19803, USA.
Robert K SempleMRC Metabolic Diseases Unit, University of Cambridge, Cambridge CB2 0QQ, UK; Centre for Cardiovascular Science, University of Edinburgh, Edinburgh EH16 4TJ, UK.
Simon J BoultonThe Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.
Jonathan J RiosSarah M. and Charles E. Seay Center for Musculoskeletal Research, Texas Scottish Rite Hospital for Children, Dallas, TX 75219, USA; Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Orthopaedic Surgery, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; McDermott Center for Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Andrew P JacksonMRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, UK. Electronic address: andrew.jackson@igmm.ed.ac.uk.
Institute of Genetics and Cancer · GBChildren's Hospital of Wisconsin · USThe University of Texas MD Anderson Cancer Center · USUniversity of Cambridge · GBRoslin Institute · GBThe Francis Crick Institute · GBWestern General Hospital · GBAlfred I. duPont Hospital for Children · USBaylor College of Medicine · USManchester Academic Health Science Centre · GBRoyal Children's Hospital · AUTemple Street Children's University Hospital · IETexas Scottish Rite Hospital for Children · USThe University of Texas Southwestern Medical Center · USUniversity of Arkansas at Little Rock · USUniversity of British Columbia · CAWellcome Sanger Institute · GBBeaumont Hospital · IECork University Hospital · IEHunter Genetics · AU

Funding

UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
Chief Scientist Office SGP/1European Research Council 281847Medical Research Council MC_PC_15080Medical Research Council MC_PC_U127580972Medical Research Council MC_UU_00007/16Medical Research Council MC_UU_00007/5Medical Research Council MR/N005902/1NCATS NIH HHS UL1 TR001105Wellcome TrustWellcome Trust 210752/Z/18/Z
6 · The paper itself

Abstract

During genome replication, polymerase epsilon (Pol ε) acts as the major leading-strand DNA polymerase. Here we report the identification of biallelic mutations in POLE, encoding the Pol ε catalytic subunit POLE1, in 15 individuals from 12 families. Phenotypically, these individuals had clinical features closely resembling IMAGe syndrome (intrauterine growth restriction [IUGR], metaphyseal dysplasia, adrenal hypoplasia congenita, and genitourinary anomalies in males), a disorder previously associated with gain-of-function mutations in CDKN1C. POLE1-deficient individuals also exhibited distinctive facial features and variable immune dysfunction with evidence of lymphocyte deficiency. All subjects shared the same intronic variant (c.1686+32C>G) as part of a common haplotype, in combination with different loss-of-function variants in trans. The intronic variant alters splicing, and together the biallelic mutations lead to cellular deficiency of Pol ε and delayed S-phase progression. In summary, we establish POLE as a second gene in which mutations cause IMAGe syndrome. These findings add to a growing list of disorders due to mutations in DNA replication genes that manifest growth restriction alongside adrenal dysfunction and/or immunodeficiency, consolidating these as replisome phenotypes and highlighting a need for future studies to understand the tissue-specific development roles of the encoded proteins.

Indexed as

AdolescentAdrenal InsufficiencyAdultAllelesChildChild, PreschoolCyclin-Dependent Kinase Inhibitor p57DNA Polymerase IIDNA ReplicationFemaleFetal Growth RetardationHumansInfantMaleMiddle AgedMutationCyclin-Dependent Kinase Inhibitor p57DNA Polymerase IIPOLE protein, humanPoly-ADP-Ribose Binding Proteinsadrenal failurecell cycleDNA replicationgrowthIMAGe syndromeimmunodeficiencymicrocephalypolymerase epsilon

Identifiers

PMID30503519
PMCPMC6288413
OpenAlexW2902710416

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.