Evidence map›Paper›PMID 30503518›Full record

ArticleAmerican journal of human genetics2018

Pathogenic Variants in Fucokinase Cause a Congenital Disorder of Glycosylation.

Bobby G Ng, Jill A Rosenfeld, Lisa Emrick, Mahim Jain, Lindsay C Burrage, Brendan Lee, Undiagnosed Diseases Network, William J Craigen, David R Bearden, Brett H Graham and 1 more

Registry-linked trialOpen access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02450851 (Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network), which is not on this map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02450851 recruitingnot on this map

Clinical and Genetic Evaluation of Patients With Undiagnosed Disorders Through the Undiagnosed Diseases Network

TypeobservationalSponsorNational Human Genome Research Institute (NHGRI)Ran2015 to 2028Enrolled20,000ConditionsGenetic Disease
3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  15. L-Fucose treatment of FUT8-CDG.Molecular genetics and metabolism reports · 2020
    Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Bobby G NgHuman Genetics Program, Sanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Lisa EmrickNeurology Section, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Mahim JainDepartment of Pediatrics, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA.
Lindsay C BurrageDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Brendan LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Undiagnosed Diseases Network
William J CraigenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
David R BeardenDepartment of Neurology, University of Rochester School of Medicine, Rochester, NY 14623, USA.
Brett H GrahamDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Hudson H FreezeHuman Genetics Program, Sanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA 92037, USA. Electronic address: hudson@sbpdiscovery.org.
Baylor College of Medicine · USDiscovery Institute · USIndiana University – Purdue University Indianapolis · USJohns Hopkins Medicine · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of Rochester · US

Funding

Pilot of New Technologies to Increase the Genomic Diagnosis of Undiagnosed Disease Network (UDN) PatientsU01HG007709 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BACINO, CARLOS A., LEE, BRENDAN · 2014 to 2022
$14.3M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
New Congenital Disorders of Glycosylation: Therapy and ModelsR01DK099551 · NIDDK · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Hudson H. Freeze · 2014 to 2026
$6.7M
Disordered Energy Metabolism in Argininosuccinate Lyase DeficiencyK08DK106453 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BURRAGE, LINDSAY C · 2015 to 2018
$622k
Clinical Pursuits by the NHGRI Office of the Clinical DirectorZIAHG200402 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GAHL, WILLIAM · 2019 to 2019
$122k
NHGRI NIH HHS U01 HG007709NICHD NIH HHS U54 HD083092NIDDK NIH HHS K08 DK106453NIDDK NIH HHS R01 DK099551
6 · The paper itself

Abstract

FUK encodes fucokinase, the only enzyme capable of converting L-fucose to fucose-1-phosphate, which will ultimately be used for synthesizing GDP-fucose, the donor substrate for all fucosyltransferases. Although it is essential for fucose salvage, this pathway is thought to make only a minor contribution to the total amount of GDP-fucose. A second pathway, the major de novo pathway, involves conversion of GDP-mannose to GDP-fucose. Here we describe two unrelated individuals who have pathogenic variants in FUK and who presented with severe developmental delays, encephalopathy, intractable seizures, and hypotonia. The first individual was compound heterozygous for c.667T>C (p.Ser223Pro) and c.2047C>T (p.Arg683Cys), and the second individual was homozygous for c.2980A>C (p.Lys994Gln). Skin fibroblasts from the first individual confirmed the variants as loss of function and showed significant decreases in total GDP-[

Indexed as

Amino Acid SequenceBrain DiseasesChildCongenital AbnormalitiesDevelopmental DisabilitiesFemaleFibroblastsFucosyltransferasesGenetic VariationGlycosylationGuanosine Diphosphate FucoseGuanosine Diphosphate MannoseHumansMaleMuscle HypotoniaPhosphotransferases (Alcohol Group Acceptor)fucokinaseFucosyltransferasesGuanosine Diphosphate FucoseGuanosine Diphosphate MannosePhosphotransferases (Alcohol Group Acceptor)Ubiquitincongenital disorder of glycosylationencephalopathyfucosylationglycan, fucoseintellectual disabilitysalvage

Identifiers

PMID30503518
PMCPMC6288200
OpenAlexW2902657099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.