Evidence map›Paper›PMID 30500954›Full record

ArticleNucleic acids research2018

Interplay between transcription regulators RUNX1 and FUBP1 activates an enhancer of the oncogene c-KIT and amplifies cell proliferation.

Lydie Debaize, Hélène Jakobczyk, Stéphane Avner, Jérémie Gaudichon, Anne-Gaëlle Rio, Aurélien A Sérandour, Lena Dorsheimer, Frédéric Chalmel, Jason S Carroll, Martin Zörnig and 6 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01282593 (Potential Role of CD9 and Implication of Motility Process in Pathogenesis of TEL/ALM1-positive ALL Relapses), which is not on this map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01282593 nacompletednot on this map

Potential Role of CD9 and Implication of Motility Process in Pathogenesis of TEL/ALM1-positive ALL Relapses (LAL TEL/ALM1 and CD9).

TypeinterventionalSponsorRennes University HospitalRan2010 to 2018Enrolled51ConditionsAcute Lymphoblastic Leukemia (ALL)ArmsImpact of CD9 expression level on motility assays, Post-transcriptional regulation of CD9
3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Lydie DebaizeUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Hélène JakobczykUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Stéphane AvnerUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Jérémie GaudichonUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Anne-Gaëlle RioUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Aurélien A SérandourCRCINA, INSERM, CNRS, Université d'Angers, Université de Nantes, 44035 Nantes, France.
Lena DorsheimerDepartment of Medicine, Hematology/Oncology, Goethe University Frankfurt, Frankfurt, Germany.
Frédéric ChalmelUniv Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35000 Rennes, France.
Jason S CarrollCancer Research UK Cambridge Institute, University of Cambridge, Cambridge CB2 0RE, UK.
Martin ZörnigGeorg-Speyer-Haus, Institute for Tumor Biology and Experimental Therapy, D-60528 Frankfurt, Germany.
Michael A RiegerDepartment of Medicine, Hematology/Oncology, Goethe University Frankfurt, Frankfurt, Germany.
Olivier DelalandeUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Gilles SalbertUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Marie-Dominique GalibertUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Virginie GandemerUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Marie-Bérengère TroadecUniv Rennes, CNRS, IGDR (Institut de Génétique et Développement de Rennes) - UMR 6290, F-35000 Rennes, France.
Centre National de la Recherche Scientifique · FRGoethe University Frankfurt · DEÉcole Centrale de Nantes · FRGeorg Speyer Haus · DEInserm · FRUniversity of Cambridge · GB

Funding

Cancer Research UK 20411
6 · The paper itself

Abstract

Runt-related transcription factor 1 (RUNX1) is a well-known master regulator of hematopoietic lineages but its mechanisms of action are still not fully understood. Here, we found that RUNX1 localizes on active chromatin together with Far Upstream Binding Protein 1 (FUBP1) in human B-cell precursor lymphoblasts, and that both factors interact in the same transcriptional regulatory complex. RUNX1 and FUBP1 chromatin localization identified c-KIT as a common target gene. We characterized two regulatory regions, at +700 bp and +30 kb within the first intron of c-KIT, bound by both RUNX1 and FUBP1, and that present active histone marks. Based on these regions, we proposed a novel FUBP1 FUSE-like DNA-binding sequence on the +30 kb enhancer. We demonstrated that FUBP1 and RUNX1 cooperate for the regulation of the expression of the oncogene c-KIT. Notably, upregulation of c-KIT expression by FUBP1 and RUNX1 promotes cell proliferation and renders cells more resistant to the c-KIT inhibitor imatinib mesylate, a common therapeutic drug. These results reveal a new mechanism of action of RUNX1 that implicates FUBP1, as a facilitator, to trigger transcriptional regulation of c-KIT and to regulate cell proliferation. Deregulation of this regulatory mechanism may explain some oncogenic function of RUNX1 and FUBP1.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, LeukemicAnimalsAntineoplastic AgentsBase SequenceBinding SitesBone Marrow CellsCell Line, TumorCell ProliferationChromatinCore Binding Factor Alpha 2 SubunitDNA-Binding ProteinsHEK293 CellsHumansImatinib MesylateMiceAntineoplastic AgentsChromatinCore Binding Factor Alpha 2 SubunitDNA-Binding ProteinsFUBP1 protein, humanImatinib MesylateKIT protein, humanProto-Oncogene Proteins c-kitRNA-Binding ProteinsRUNX1 protein, human

Identifiers

PMID30500954
PMCPMC6265458
OpenAlexW2888232804

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.