Evidence map›Paper›PMID 30500900›Full record

ArticleGenome biology and evolution2019

Nephromyces Encodes a Urate Metabolism Pathway and Predicted Peroxisomes, Demonstrating That These Are Not Ancient Losses of Apicomplexans.

Christopher Paight, Claudio H Slamovits, Mary Beth Saffo, Christopher E Lane

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Christopher PaightDepartment of Biological Sciences, University of Rhode Island.
Claudio H SlamovitsDepartment of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
Mary Beth SaffoDepartment of Biological Sciences, University of Rhode Island.
Christopher E LaneDepartment of Biological Sciences, University of Rhode Island.
University of Rhode Island · USDalhousie University · CANational Museum of Natural History · US

Funding

Comparative genomics of a unique mutualistic apicomplexanR03AI124092 · NIAID · UNIVERSITY OF RHODE ISLAND · PI LANE, CHRISTOPHER · 2016 to 2017
$145k
NIAID NIH HHS R03 AI124092
6 · The paper itself

Abstract

The phylum Apicomplexa is a quintessentially parasitic lineage, whose members infect a broad range of animals. One exception to this may be the apicomplexan genus Nephromyces, which has been described as having a mutualistic relationship with its host. Here we analyze transcriptome data from Nephromyces and its parasitic sister taxon, Cardiosporidium, revealing an ancestral purine degradation pathway thought to have been lost early in apicomplexan evolution. The predicted localization of many of the purine degradation enzymes to peroxisomes, and the in silico identification of a full set of peroxisome proteins, indicates that loss of both features in other apicomplexans occurred multiple times. The degradation of purines is thought to play a key role in the unusual relationship between Nephromyces and its host. Transcriptome data confirm previous biochemical results of a functional pathway for the utilization of uric acid as a primary nitrogen source for this unusual apicomplexan.

Indexed as

ApicomplexaPeroxisomesPurinesUric AcidPurinesUric Acid

Identifiers

PMID30500900
PMCPMC6320678
OpenAlexW2903248410

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.