Evidence map›Paper›PMID 30500817›Full record

ArticlePLoS neglected tropical diseases2018

Virulotyping of Salmonella enterica serovar Typhi isolates from Pakistan: Absence of complete SPI-10 in Vi negative isolates.

Sadia Liaquat, Yasra Sarwar, Aamir Ali, Abdul Haque, Muhammad Farooq, Ilargi Martinez-Ballesteros, Lorena Laorden, Javier Garaizar, Joseba Bikandi

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification ofVeterinary research forum : an international quarterly journal · 2023
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Microorganisms · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sadia LiaquatEnteric Pathogen Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan affiliated with Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan.
Yasra SarwarEnteric Pathogen Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan affiliated with Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan.ORCID 0000-0001-9816-7674
Aamir AliEnteric Pathogen Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan affiliated with Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan.
Abdul HaqueAkhuwat Faisalabad Institute For Research In Science And Technology, Faisalabad, Pakistan.
Muhammad FarooqEnteric Pathogen Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan affiliated with Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan.ORCID 0000-0003-0704-3372
Ilargi Martinez-BallesterosDepartment of Immunology, Microbiology and Parasitology, University of the Basque Country, (UPV/EHU), Vitoria-Gasteiz, Spain.ORCID 0000-0002-8867-1487
Lorena LaordenDepartment of Immunology, Microbiology and Parasitology, University of the Basque Country, (UPV/EHU), Vitoria-Gasteiz, Spain.ORCID 0000-0002-0538-7457
Javier GaraizarDepartment of Immunology, Microbiology and Parasitology, University of the Basque Country, (UPV/EHU), Vitoria-Gasteiz, Spain.ORCID 0000-0002-3093-7078
Joseba BikandiDepartment of Immunology, Microbiology and Parasitology, University of the Basque Country, (UPV/EHU), Vitoria-Gasteiz, Spain.ORCID 0000-0003-1289-0314

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pathogenesis of Salmonella enterica serovar Typhi (S. Typhi), the cause of typhoid fever in humans, is mainly attributed to the acquisition of horizontally acquired DNA elements. Salmonella pathogenicity islands (SPIs) are indubitably the most important form of horizontally acquired DNA with respect to pathogenesis of this bacterium. The insertion or deletion of any of these transferrable SPIs may have impact on the virulence potential of S. Typhi. In this study, the virulence potential and genetic relatedness of 35 S. Typhi isolates, collected from 2004 to 2013 was determined by identification of SPI and non-SPI virulence factors through a combination of techniques including virulotyping, Whole Genome Sequencing (WGS), and Variable Number of Tandem Repeats (VNTR) profiling. In order to determine the virulence potential of local S. Typhi isolates, 56 virulence related genes were studied by PCR. These genes are located in the core as well as accessory genome (SPIs and plasmid). Major variations among studied virulence determinants were found in case of SPI-7 and SPI-10 associated genes. On the basis of presence of virulence related genes, the studied S. Typhi isolates from Pakistan were clustered into two virulotypes Vi-positive and Vi-negative. Interestingly, SPI-7 and SPI-10 were collectively absent or present in Vi-negative and Vi-positive strains, respectively. Two Vi-negative and 11 Vi-positive S. Typhi strains were also analyzed by whole genome sequencing (WGS) and their results supported the PCR results. Genetic diversity was tested by VNTR-based molecular typing. All 35 isolates were clustered into five groups. Overall, all Vi-negative isolates were placed in a single group (T5) whereas Vi-positive isolates were grouped into four types. Vi-negative and Vi-positive isolates were mutually exclusive. This is the first report on the comparative distribution of SPI and non-SPI related virulence genes in Vi-negative and Vi-positive S. Typhi isolates with an important finding that SPI-10 is absent in all Vi-negative isolates.

Indexed as

Genomic IslandsBacterial ProteinsGenome, BacterialHumansMinisatellite RepeatsPakistanPolysaccharides, BacterialSalmonella typhiTyphoid FeverVirulenceVirulence FactorsBacterial Proteinscapsular polysaccharide, SalmonellaPolysaccharides, BacterialVirulence Factors

Identifiers

PMID30500817
PMCPMC6267989

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.