Evidence map›Paper›PMID 30500535›Full record

ArticleCell2018

Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.

Yongdae Shin, Yi-Che Chang, Daniel S W Lee, Joel Berry, David W Sanders, Pierre Ronceray, Ned S Wingreen, Mikko Haataja, Clifford P Brangwynne

Erratum issuedAbstract readVideo-Audio Media
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 361 papers.

0numbers the graph read from it
0cells of the map it votes in
361citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

361 citing papers in PubMed.

  1. Review
  2. Review
  3. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  4. Article
  5. 3D Genome Engineering Using CRISPR/dCas Systems.International journal of molecular sciences · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Chemical reviews · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Investigating Phase Separation in Genome Folding via Multiscale Computational Modeling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  18. Review
  19. Review
  20. Article

301 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Yongdae ShinDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA; Department of Mechanical and Aerospace Engineering, Seoul National University, Seoul 08826, South Korea.
Yi-Che ChangDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA; Department of Chemistry, Princeton University, Princeton, NJ 08544, USA.
Daniel S W LeeLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Joel BerryDepartment of Materials Science and Engineering, University of Pennsylvania, Philadelphia, PA 19104, USA.
David W SandersDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA.
Pierre RoncerayPrinceton Center for Theoretical Science, Princeton University, Princeton, NJ 08544, USA.
Ned S WingreenLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA; Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Mikko HaatajaDepartment of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ 08544, USA.
Clifford P BrangwynneDepartment of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA; Howard Hughes Medical Institute, Princeton University, Princeton, NJ 08544, USA. Electronic address: cbrangwy@princeton.edu.

Funding

Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
Optogenetic Droplets: Using Light to Control Nucleoplasmic Phase SeparationU01DA040601 · NIDA · PRINCETON UNIVERSITY · PI BRANGWYNNE, CLIFFORD P · 2015 to 2019
$1.4M
Howard Hughes Medical InstituteNHGRI NIH HHS T32 HG003284NIDA NIH HHS U01 DA040601
6 · The paper itself

Abstract

Phase transitions involving biomolecular liquids are a fundamental mechanism underlying intracellular organization. In the cell nucleus, liquid-liquid phase separation of intrinsically disordered proteins (IDPs) is implicated in assembly of the nucleolus, as well as transcriptional clusters, and other nuclear bodies. However, it remains unclear whether and how physical forces associated with nucleation, growth, and wetting of liquid condensates can directly restructure chromatin. Here, we use CasDrop, a novel CRISPR-Cas9-based optogenetic technology, to show that various IDPs phase separate into liquid condensates that mechanically exclude chromatin as they grow and preferentially form in low-density, largely euchromatic regions. A minimal physical model explains how this stiffness sensitivity arises from lower mechanical energy associated with deforming softer genomic regions. Targeted genomic loci can nonetheless be mechanically pulled together through surface tension-driven coalescence. Nuclear condensates may thus function as mechano-active chromatin filters, physically pulling in targeted genomic loci while pushing out non-targeted regions of the neighboring genome. VIDEO ABSTRACT.

Indexed as

Genome, HumanPhase TransitionAnimalsCell Line, TumorCell NucleolusChromatinCytoplasmFemaleHEK293 CellsHumansIntrinsically Disordered ProteinsMaleMiceNIH 3T3 CellsChromatinIntrinsically Disordered Proteinschromatincondensatesgene regulationmechanobiologynuclear mechanicsnuclear organizationoptogeneticsphase immiscibilityphase separation

Identifiers

PMID30500535
PMCPMC6724728

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.