Evidence map›Paper›PMID 30499003›Full record

ReviewExtremophiles : life under extreme conditions2019

Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with 'ARMAN'.

Olga V Golyshina, Rafael Bargiela, Peter N Golyshin

Abstract readReview
In one paragraph

Review in Extremophiles : life under extreme conditions, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  5. Review
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  9. Diversity of "Genes · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Olga V GolyshinaSchool of Natural Sciences, Bangor University, Deiniol Road, Bangor, LL57 2UW, UK. o.golyshina@bangor.ac.uk.
Rafael BargielaSchool of Natural Sciences, Bangor University, Deiniol Road, Bangor, LL57 2UW, UK.
Peter N GolyshinSchool of Natural Sciences, Bangor University, Deiniol Road, Bangor, LL57 2UW, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently, the order Thermoplasmatales was expanded through the cultivation and description of species Cuniculiplasma divulgatum and corresponding family Cuniculiplasmataceae. Initially isolated from acidic streamers, signatures of these archaea were ubiquitously found in various low-pH settings. Eight genomes with various levels of completeness are currently available, all of which exhibit very high sequence identities and genomic conservation. Co-existence of Cuniculiplasmataceae with archaeal Richmond Mine acidophilic nanoorganisms ('ARMAN')-related archaea representing an intriguing group within the "microbial dark matter" suggests their common fundamental environmental strategy and metabolic networking. The specific case of "Candidatus Mancarchaeum acidiphilum" Mia14 phylogenetically affiliated with "Ca. Micrarchaeota" from the superphylum "Ca. Diapherotrites" along with the presence of other representatives of 'DPANN' with significantly reduced genomes points at a high probability of close interactions between the latter and various Thermoplasmatales abundant in situ. This review critically assesses our knowledge on specific functional role and potential of the members of Cuniculiplasmataceae abundant in acidophilic microbiomes through the analysis of distribution, physiological and genomic patterns, and their interactions with 'ARMAN'-related archaea.

Indexed as

Genome, ArchaealPhylogenyMetabolomeThermoplasmalesAcidophilic archaeaARMANCa. MicrarchaeotaCuniculiplasmaCuniculiplasmataceaeThermoplasmatales

Identifiers

PMID30499003
PMCPMC6336744

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.