Evidence map›Paper›PMID 30498254›Full record

ArticleScientific reports2018

Exploration of deep terrestrial subsurface microbiome in Late Cretaceous Deccan traps and underlying Archean basement, India.

Avishek Dutta, Srimanti Dutta Gupta, Abhishek Gupta, Jayeeta Sarkar, Sukanta Roy, Abhijit Mukherjee, Pinaki Sar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 61 citations in OpenAlex.

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  16. Impact of Covid-19 Lockdown on Availability of Drinking Water in the Arsenic-Affected Ganges River Basin.International journal of environmental research and public health · 2021
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Avishek DuttaEnvironmental microbiology and genomics laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
Srimanti Dutta GuptaSchool of Environmental Science and Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
Abhishek GuptaEnvironmental microbiology and genomics laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
Jayeeta SarkarEnvironmental microbiology and genomics laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
Sukanta RoyMinistry of Earth Sciences, Borehole Geophysics Research Laboratory, Karad, 415114, India.
Abhijit MukherjeeSchool of Environmental Science and Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.ORCID http://orcid.org/0000-0002-0555-0875
Pinaki SarEnvironmental microbiology and genomics laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India. psar@bt.iitkgp.ac.in.ORCID http://orcid.org/0000-0001-8538-2527
Indian Institute of Technology Kharagpur · INNational Geophysical Research Institute · IN

Funding

Ministry of Earth Sciences (MoES) MoES/P.O.(Seismo)/1(181)/2013
6 · The paper itself

Abstract

Scientific deep drilling at Koyna, western India provides a unique opportunity to explore microbial life within deep biosphere hosted by ~65 Myr old Deccan basalt and Archaean granitic basement. Characteristic low organic carbon content, mafic/felsic nature but distinct trend in sulfate and nitrate concentrations demarcates the basaltic and granitic zones as distinct ecological habitats. Quantitative PCR indicates a depth independent distribution of microorganisms predominated by bacteria. Abundance of dsrB and mcrA genes are relatively higher (at least one order of magnitude) in basalt compared to granite. Bacterial communities are dominated by Alpha-, Beta-, Gammaproteobacteria, Actinobacteria and Firmicutes, whereas Euryarchaeota is the major archaeal group. Strong correlation among the abundance of autotrophic and heterotrophic taxa is noted. Bacteria known for nitrite, sulfur and hydrogen oxidation represent the autotrophs. Fermentative, nitrate/sulfate reducing and methane metabolising microorganisms represent the heterotrophs. Lack of shared operational taxonomic units and distinct clustering of major taxa indicate possible community isolation. Shotgun metagenomics corroborate that chemolithoautotrophic assimilation of carbon coupled with fermentation and anaerobic respiration drive this deep biosphere. This first report on the geomicrobiology of the subsurface of Deccan traps provides an unprecedented opportunity to understand microbial composition and function in the terrestrial, igneous rock-hosted, deep biosphere.

Indexed as

Environmental MicrobiologyMicrobiotaBiodiversityComputational BiologyGeologic SedimentsIndiaMetagenomeMetagenomicsRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID30498254
PMCPMC6265293
OpenAlexW2901938735

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.