Evidence map›Paper›PMID 30498220›Full record

ArticleNature communications2018

A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts.

Soo-Jin Yeom, Moonjeong Kim, Kil Koang Kwon, Yaoyao Fu, Eugene Rha, Sung-Hyun Park, Hyewon Lee, Haseong Kim, Dae-Hee Lee, Dong-Myung Kim and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Balancing Cell Growth and Product Synthesis for Efficient Microbial Cell Factories.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Efficient production of salicylic acid through CmeR-PBiotechnology for biofuels and bioproducts · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. A Genetically Encoded Biosensor for the Detection of Levulinic Acid.Journal of microbiology and biotechnology · 2023
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Soo-Jin YeomSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Moonjeong KimSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Kil Koang KwonSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Yaoyao FuSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Eugene RhaSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Sung-Hyun ParkSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Hyewon LeeSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Haseong KimSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.
Dae-Hee LeeSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea.ORCID http://orcid.org/0000-0002-0423-9057
Dong-Myung KimDepartment of Chemical Engineering and Applied Chemistry, Chungnam National University, Daejeon, 34134, Republic of Korea.
Seung-Goo LeeSynthetic Biology and Bioengineering Research Center, KRIBB, Daejeon, 34141, Republic of Korea. sglee@kribb.re.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biocatalytic cyclization is highly desirable for efficient synthesis of biologically derived chemical substances, such as the commodity chemicals ε-caprolactam and δ-valerolactam. To identify biocatalysts in lactam biosynthesis, we develop a caprolactam-detecting genetic enzyme screening system (CL-GESS). The Alcaligenes faecalis regulatory protein NitR is adopted for the highly specific detection of lactam compounds against lactam biosynthetic intermediates. We further systematically optimize the genetic components of the CL-GESS to enhance sensitivity, achieving 10-fold improvement. Using this highly sensitive GESS, we screen marine metagenomes and find an enzyme that cyclizes ω-amino fatty acids to lactam. Moreover, we determine the X-ray crystal structure and catalytic residues based on mutational analysis of the cyclase. The cyclase is also used as a helper enzyme to sense intracellular ω-amino fatty acids. We expect this simple and accurate biosensor to have wide-ranging applications in rapid screening of new lactam-synthesizing enzymes and metabolic engineering for lactam bio-production.

Indexed as

BiocatalysisBiosensing TechniquesAlcaligenes faecalisDNA Mutational AnalysisLactamsProtein Structure, SecondaryLactams

Identifiers

PMID30498220
PMCPMC6265244

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.