Evidence map›Paper›PMID 30498029›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Poplar phyllosphere harbors disparate isoprene-degrading bacteria.

Andrew T Crombie, Nasmille L Larke-Mejia, Helen Emery, Robin Dawson, Jennifer Pratscher, Gordon P Murphy, Terry J McGenity, J Colin Murrell

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Whole-genomic and transcriptomic analyses elucidateApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Applied microbiology of the phyllosphere.Applied microbiology and biotechnology · 2024
    Review
  12. Analysis of Essential Isoprene Metabolic Pathway Proteins inApplied and environmental microbiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Andrew T CrombieSchool of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom; a.crombie@uea.ac.uk.ORCID 0000-0002-8577-2602
Nasmille L Larke-MejiaSchool of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom.
Helen EmerySchool of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom.
Robin DawsonSchool of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom.
Jennifer PratscherLyell Centre, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom.
Gordon P MurphySchool of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom.
Terry J McGenitySchool of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom.
J Colin MurrellSchool of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom.
University of East Anglia · GBUniversity of Essex · GBHeriot-Watt University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The climate-active gas isoprene (2-methyl-1,3-butadiene) is released to the atmosphere in huge quantities, almost equaling that of methane, yet we know little about the biological cycling of isoprene in the environment. Although bacteria capable of growth on isoprene as the sole source of carbon and energy have previously been isolated from soils and sediments, no microbiological studies have targeted the major source of isoprene and examined the phyllosphere of isoprene-emitting trees for the presence of degraders of this abundant carbon source. Here, we identified isoprene-degrading bacteria in poplar tree-derived microcosms by DNA stable isotope probing. The genomes of isoprene-degrading taxa were reconstructed, putative isoprene metabolic genes were identified, and isoprene-related gene transcription was analyzed by shotgun metagenomics and metatranscriptomics. Gram-positive bacteria of the genus

Indexed as

Genome, BacterialMetagenomicsBiodegradation, EnvironmentalButadienesComamonadaceaeDNA, BacterialHemiterpenesMixed Function OxygenasesPhylogenyPopulusRhodococcusSoil MicrobiologyButadienesDNA, BacterialHemiterpenesisopreneMixed Function OxygenasesDNA-SIPisoprenemicrobiologyphyllosphereplant–microbe interactions

Identifiers

PMID30498029
PMCPMC6304962
OpenAlexW2903296857

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.