Evidence map›Paper›PMID 30497514›Full record

ArticleBMC research notes2018

Proteomics of the wheat tan spot pathogen Pyrenophora tritici-repentis.

Caroline S Moffat, Thomas Stoll, Paula Moolhuijzen

Abstract readDataset
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Caroline S MoffatCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Perth, WA, Australia. caroline.moffat@curtin.edu.au.
Thomas StollProtein Discovery Centre, QIMR Berghofer Medical Research Institute, 300 Herston Rd, Herston, QLD, Australia.
Paula MoolhuijzenCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Perth, WA, Australia.

Funding

Grains Research and Development Corporation CUR00023
6 · The paper itself

Abstract

objectivesThe fungus Pyrenophora tritici-repentis is a major pathogen of wheat worldwide, causing the leaf spotting disease tan spot. To best inform approaches for plant genetic resistance, an understanding of the biology and pathogenicity mechanisms of this fungal pathogen is essential. Here, intracellular and extracellular proteins of P. tritici-repentis were extracted, and peptides analysed via high-resolution mass spectrometry. Our objective was to generate a useful proteomics resource for P. tritici-repentis. A survey of proteins secreted by the pathogen into culture filtrate is especially useful, as these are likely to come in direct contact with the wheat host and may play important roles in infection/pathogenicity. The peptide data presented herein, has also been used to successfully verify and refine in silico predicted P. tritici-repentis gene annotations, through the validation of alternative splicing and reading frame shifts. DATA DESCRIPTION: The data sets presented consist of peptide spectra of the extracellular and intracellular proteomes of three P. tritici-repentis isolates. Peptide matches to translated transcripts of the North American reference isolate Pt-1C-BFP are also provided.

Indexed as

AscomycotaFungal ProteinsProteomeDatasets as TopicPlant DiseasesPlant LeavesTriticumFungal ProteinsProteomeFungusNecrotrophPathogenProteomePyrenophora tritici-repentisTan spotWheatYellow spot

Identifiers

PMID30497514
PMCPMC6267847

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.