Evidence map›Paper›PMID 30496401›Full record

ArticleGenome biology and evolution2019

Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?

Camille Berthelot, Jane Clarke, Thomas Desvignes, H William Detrich, Paul Flicek, Lloyd S Peck, Michael Peters, John H Postlethwait, Melody S Clark

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  3. Challenges and limitations for live cell imaging in extreme cold.Methods and applications in fluorescence · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Camille BerthelotLaboratoire Dynamique et Organisation des Génomes (Dyogen), Institut de Biologie de l'Ecole Normale Supérieure - UMR 8197, INSERM U1024, Paris Cedex 05, France.
Jane ClarkeDepartment of Chemistry, University of Cambridge, United Kingdom.
Thomas DesvignesInstitute of Neuroscience, University of Oregon.
H William DetrichDepartment of Marine and Environmental Sciences, Marine Science Center, Northeastern University.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, United Kingdom.
Lloyd S PeckBritish Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom.
Michael PetersDepartment of Marine and Environmental Sciences, Marine Science Center, Northeastern University.
John H PostlethwaitInstitute of Neuroscience, University of Oregon.
Melody S ClarkBritish Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom.
British Antarctic Survey · GBEuropean Bioinformatics Institute · GBNortheastern University · USUniversity of Oregon · USUniversity of Cambridge · GB

Funding

Wellcome Trust WT108749/Z/15/Z
6 · The paper itself

Abstract

The evolution of antifreeze glycoproteins has enabled notothenioid fish to flourish in the freezing waters of the Southern Ocean. Whereas successful at the biodiversity level to life in the cold, paradoxically at the cellular level these stenothermal animals have problems producing, folding, and degrading proteins at their ambient temperatures of -1.86 °C. In this first multi-species transcriptome comparison of the amino acid composition of notothenioid proteins with temperate teleost proteins, we show that, unlike psychrophilic bacteria, Antarctic fish provide little evidence for the mass alteration of protein amino acid composition to enhance protein folding and reduce protein denaturation in the cold. The exception was the significant overrepresentation of positions where leucine in temperate fish proteins was replaced by methionine in the notothenioid orthologues. We hypothesize that these extra methionines have been preferentially assimilated into the genome to act as redox sensors in the highly oxygenated waters of the Southern Ocean. This redox hypothesis is supported by analyses of notothenioids showing enrichment of genes associated with responses to environmental stress, particularly reactive oxygen species. So overall, although notothenioid fish show cold-associated problems with protein homeostasis, they may have modified only a selected number of biochemical pathways to work efficiently below 0 °C. Even a slight warming of the Southern Ocean might disrupt the critical functions of this handful of key pathways with considerable impacts for the functioning of this ecosystem in the future.

Indexed as

AcclimatizationFreezingAnimalsAntarctic RegionsEvolution, MolecularFish ProteinsMethioninePerciformesProtein FoldingTranscriptomeFish ProteinsMethionine

Identifiers

PMID30496401
PMCPMC6336007
OpenAlexW2949875687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.