Evidence map›Paper›PMID 30496325›Full record

ArticlePLoS pathogens2018

Specificity and functional interplay between influenza virus PA-X and NS1 shutoff activity.

Chutikarn Chaimayo, Megan Dunagan, Tsuyoshi Hayashi, Netty Santoso, Toru Takimoto

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  6. The ribosomal landscape in influenza A virus infection: from molecular mechanisms to clinical relevance.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Chutikarn ChaimayoDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America.
Megan DunaganDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America.
Tsuyoshi HayashiDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America.
Netty SantosoDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America.
Toru TakimotoDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America.ORCID 0000-0001-6612-694X
University of Rochester Medical Center · USSiriraj Hospital · TH

Funding

Infection and Immunity: The Pathogenesis of Host-Microbe InteractionsT32AI118689 · NIAID · UNIVERSITY OF ROCHESTER · PI Paul M. Dunman, BRIAN M WARD · 2015 to 2026
$2.5M
Influenza virus host shutoff mechanismR01AI129988 · NIAID · UNIVERSITY OF ROCHESTER · PI TAKIMOTO, TORU · 2017 to 2021
$1.9M
NIAID NIH HHS R01 AI129988NIAID NIH HHS T32 AI118689
6 · The paper itself

Abstract

Influenza A viruses modulate host antiviral responses to promote viral growth and pathogenicity. Through viral PA-X and NS1 proteins, the virus is capable of suppressing host protein synthesis, termed "host shutoff." Although both proteins are known to induce general shutoff, specificity of target genes and their functional interplay in mediating host shutoff are not fully elucidated. In this study, we generated four recombinant influenza A/California/04/2009 (pH1N1) viruses containing mutations affecting the expression of active PA-X and NS1. We analyzed viral growth, general shutoff activity, specificity of mRNA targets, and viral gene expressions. Our results showed that PA-X was the major contributor in reducing general host protein expression in the virus-infected cells. Intriguingly, our transcriptomic analysis from infected human airway A549 cells indicate that shutoff-active NS1 specifically targeted host mRNAs related to interferon (IFN) signaling pathways and cytokine release. Specificity of target mRNAs was less evident in PA-X, although it preferentially degraded genes associated with cellular protein metabolism and protein repair. Interestingly, in the presence of shutoff-active NS1, PA-X also degraded viral mRNAs, especially NS segments. The virus expressing shutoff-active NS1 with reduced amount of PA-X expression most efficiently suppressed antiviral and innate immune responses in human cells, indicating that influenza virus needs to optimize the contribution of these two shutoff proteins to circumvent host responses for its optimum growth.

Indexed as

A549 CellsAntiviral AgentsHEK293 CellsHost-Pathogen InteractionsHumansImmunity, InnateInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza, HumanInterferonsProtein BiosynthesisRepressor ProteinsRNA, MessengerViral Nonstructural ProteinsVirus ReplicationAntiviral AgentsINS1 protein, influenza virusInterferonsPA-X protein, influenza A virusRepressor ProteinsRNA, MessengerViral Nonstructural Proteins

Identifiers

PMID30496325
PMCPMC6289448
OpenAlexW2902072701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.