Evidence map›Paper›PMID 30496238›Full record

ArticlePloS one2018

Conformational sampling of CpxA: Connecting HAMP motions to the histidine kinase function.

Nathalie Duclert-Savatier, Guillaume Bouvier, Michael Nilges, Thérèse E Malliavin

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nathalie Duclert-SavatierUnité de Bioinformatique Structurale, Institut Pasteur and CNRS UMR3528, Paris, France.
Guillaume BouvierUnité de Bioinformatique Structurale, Institut Pasteur and CNRS UMR3528, Paris, France.ORCID 0000-0003-2792-6084
Michael NilgesUnité de Bioinformatique Structurale, Institut Pasteur and CNRS UMR3528, Paris, France.
Thérèse E MalliavinUnité de Bioinformatique Structurale, Institut Pasteur and CNRS UMR3528, Paris, France.ORCID 0000-0002-3276-3366

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the histidine kinase family, the HAMP and DHp domains are considered to play an important role into the transmission of signal arising from environmental conditions to the auto-phosphorylation site and to the binding site of response regulator. Several conformational motions inside HAMP have been proposed to transmit this signal: (i) the gearbox model, (ii) α helices rotations, pistons and scissoring, (iii) transition between ordered and disordered states. In the present work, we explore by temperature-accelerated molecular dynamics (TAMD), an enhanced sampling technique, the conformational space of the cytoplasmic region of histidine kinase CpxA. Several HAMP motions, corresponding to α helices rotations, pistoning and scissoring have been detected and correlated to the segmental motions of HAMP and DHp domains of CpxA.

Indexed as

MovementEscherichia coli ProteinsHistidine KinaseMolecular Dynamics SimulationProtein DomainsProtein KinasesCpxA protein, E coliEscherichia coli ProteinsHistidine KinaseProtein Kinases

Identifiers

PMID30496238
PMCPMC6264157

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.