Evidence map›Paper›PMID 30496224›Full record

ArticlePloS one2018

Development and validation of a method for human papillomavirus genotyping based on molecular beacon probes.

Jiangfeng Lyu, Yuefeng Yu, Caixia Pan, Jing Zhou, Xuyi Ren

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jiangfeng LyuResearch and Development Centre, Hangzhou DiAn Medical Laboratory, Hangzhou, Zhejiang, China.
Yuefeng YuResearch and Development Centre, Hangzhou DiAn Medical Laboratory, Hangzhou, Zhejiang, China.
Caixia PanResearch and Development Centre, Hangzhou DiAn Medical Laboratory, Hangzhou, Zhejiang, China.
Jing ZhouResearch and Development Centre, Hangzhou DiAn Medical Laboratory, Hangzhou, Zhejiang, China.
Xuyi RenResearch and Development Centre, Hangzhou DiAn Medical Laboratory, Hangzhou, Zhejiang, China.ORCID 0000-0001-5829-8055

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a new assaying system for the detection and genotyping of human papillomavirus (HPV) based on linear-after-the-exponential-PCR(LATE-PCR) and melting curve analysis. The 23 most prevalent HPV strains (types 6, 11, 16, 18, 31, 33, 35, 39, 42, 45, 51, 52, 53, 56, 58, 59, 66, 68, 70, 73, 81, 82, and 83) are assayed in two sealed reaction tubes within 2 h. Good sensitivity and specificity was evaluated by testing cloned HPV DNA and clinical samples. The detection limit was 5-500 copies/reaction depending on the genotype. No cross-reactivity was observed with the other HPV types that are not covered by our method or pathogens tested which were commonly found in female genital tract. When compared with the HPV GenoArray Diagnostic kit, the results from 1104 clinical samples suggest good overall agreement between the two methods,(98.37%, 95% CI: 97.44%-98.97%) and the kappa value was 0.954. Overall, this new HPV genotyping assay system presents a simple, rapid, universally applicable, sensitive, and highly specific detection methodology that should be useful for HPV detection and genotyping, therefore, is potentially of great value in clinical application.

Indexed as

DNA Probes, HPVGenotypeGenotyping TechniquesHuman Papillomavirus DNA TestsHumansMolecular Diagnostic TechniquesPapillomaviridaePapillomavirus InfectionsPolymerase Chain ReactionSensitivity and SpecificityDNA Probes, HPV

Identifiers

PMID30496224
PMCPMC6264813

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.