Evidence map›Paper›PMID 30489040›Full record

ArticleCurrent protocols in microbiology2019

Analyzing Diguanylate Cyclase Activity In Vivo using a Heterologous Escherichia coli Host.

Nicolas Fernandez, Christopher M Waters

Open access · greenAbstract read
In one paragraph

Article in Current protocols in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Plasmid-free cheater cells commonly evolve during laboratory growth.Applied and environmental microbiology · 2024
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nicolas FernandezDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan.
Christopher M WatersDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan.
Michigan State University · US

Funding

From structure to systems: Understanding cyclic di-GMP control of transcriptionR01GM109259 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2015 to 2019
$2.0M
Molecular mechanisms of adaptive diversity in Burkholderia biofilmsR01GM110444 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI COOPER, VAUGHN · 2015 to 2019
$1.5M
NIGMS NIH HHS R01 GM109259NIGMS NIH HHS R01 GM110444
6 · The paper itself

Abstract

Bacterial biofilms are notorious for their deleterious effects on human health and industrial biofouling. Key processes in biofilm formation are regulated by the second messenger signal cyclic dimeric guanosine monophosphate (c-di-GMP); accumulation of c-di-GMP promotes biofilm formation, while lowering c-di-GMP promotes motility. Complex networks of modular enzymes are involved in regulating c-di-GMP homeostasis. Understanding how these enzymes function in bacterial cells can help enlighten how bacteria use environmental cues to modulate c-di-GMP and cell physiology. In this article, we describe a workflow that utilizes Escherichia coli as a heterologous host to allow the researcher to identify genes encoding potential c-di-GMP-metabolizing proteins, to express the gene of interest from an inducible plasmid, and to directly detect changes in intracellular c-di-GMP using ultra-performance liquid chromatography-tandem mass spectrometry. © 2018 by John Wiley & Sons, Inc.

Indexed as

Chromatography, High Pressure LiquidCloning, MolecularCyclic GMPEscherichia coliEscherichia coli ProteinsGene ExpressionGene Expression Regulation, BacterialMass SpectrometryPhosphorus-Oxygen LyasesPlasmidsCyclic GMPdiguanylate cyclaseEscherichia coli ProteinsPhosphorus-Oxygen Lyasesbiofilmcyclic di-GMPdiguanylate cyclaseEscherichia coliGGDEFmass spectrometry

Identifiers

PMID30489040
PMCPMC6340730
OpenAlexW2902586906

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.