Evidence map›Paper›PMID 30487538›Full record

ArticleScientific reports2018

Dynamic interaction of poly(A)-binding protein with the ribosome.

Kodai Machida, Tomoaki Shigeta, Yuki Yamamoto, Takuhiro Ito, Yuri Svitkin, Nahum Sonenberg, Hiroaki Imataka

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Structural insights into the role of eIF3 in translation mediated by the HCV IRES.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kodai MachidaDepartment of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, 671-2201, Japan.
Tomoaki ShigetaDepartment of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, 671-2201, Japan.
Yuki YamamotoDepartment of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, 671-2201, Japan.
Takuhiro ItoDivision of Structural and Synthetic Biology, RIKEN Center for Life Science Technologies, and Laboratory for Translation Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0003-3704-5205
Yuri SvitkinDepartment of Biochemistry and Rosalind and Morris Goodman Cancer Research Centre, McGill University, Montreal, H3A 1A3, Canada.
Nahum SonenbergDepartment of Biochemistry and Rosalind and Morris Goodman Cancer Research Centre, McGill University, Montreal, H3A 1A3, Canada.
Hiroaki ImatakaDepartment of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, 671-2201, Japan. imataka@eng.u-hyogo.ac.jp.ORCID http://orcid.org/0000-0002-3731-0294
University of Hyogo · JPMcGill University Health Centre · CARIKEN Center for Biosystems Dynamics Research · JP

Funding

Japan Society for the Promotion of Science (JSPS) 17H04995Japan Society for the Promotion of Science (JSPS) P15H04324Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 26116002
6 · The paper itself

Abstract

Eukaryotic mRNA has a cap structure and a poly(A) tail at the 5' and 3' ends, respectively. The cap structure is recognized by eIF (eukaryotic translation initiation factor) 4 F, while the poly(A) tail is bound by poly(A)-binding protein (PABP). PABP has four RNA recognition motifs (RRM1-4), and RRM1-2 binds both the poly(A) tail and eIF4G component of eIF4F, resulting in enhancement of translation. Here, we show that PABP interacts with the 40S and 60S ribosomal subunits dynamically via RRM2-3 or RRM3-4. Using a reconstituted protein expression system, we demonstrate that wild-type PABP activates translation in a dose-dependent manner, while a PABP mutant that binds poly(A) RNA and eIF4G, but not the ribosome, fails to do so. From these results, functional significance of the interaction of PABP with the ribosome is discussed.

Indexed as

Amino Acid SequenceBinding SitesCell LineEukaryotic Initiation Factor-4FEukaryotic Initiation Factor-4GHumansModels, MolecularMolecular ConformationPoly(A)-Binding ProteinsProtein BindingProtein BiosynthesisRecombinant ProteinsRibosomesRNA, MessengerStructure-Activity RelationshipEukaryotic Initiation Factor-4FEukaryotic Initiation Factor-4GPoly(A)-Binding ProteinsRecombinant ProteinsRNA, Messenger

Identifiers

PMID30487538
PMCPMC6261967
OpenAlexW2900657387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.