Evidence map›Paper›PMID 30486842›Full record

ArticleMicrobial cell factories2018

The metabolic switch can be activated in a recombinant strain of Streptomyces lividans by a low oxygen transfer rate in shake flasks.

Ramsés A Gamboa-Suasnavart, Norma A Valdez-Cruz, Gerardo Gaytan-Ortega, Greta I Reynoso-Cereceda, Daniel Cabrera-Santos, Lorena López-Griego, Wolf Klöckner, Jochen Büchs, Mauricio A Trujillo-Roldán

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
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  6. Review
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  8. Article
  9. Customized chitooligosaccharide production-controlling their lengthFrontiers in bioengineering and biotechnology · 2022
    Article
  10. Article
  11. Impact of Oxygen Supply and Scale Up onFrontiers in bioengineering and biotechnology · 2020
    Article
  12. Characterization of the Metabolic Response ofAntibiotics (Basel, Switzerland) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ramsés A Gamboa-SuasnavartPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Norma A Valdez-CruzPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Gerardo Gaytan-OrtegaPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Greta I Reynoso-CerecedaPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Daniel Cabrera-SantosPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Lorena López-GriegoPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico.
Wolf KlöcknerDepartment of Biochemical Engineering (AVT.BioVT), RWTH Aachen University of Technology, Forckenbeckstraße 51, 52074, Aachen, Germany.
Jochen BüchsDepartment of Biochemical Engineering (AVT.BioVT), RWTH Aachen University of Technology, Forckenbeckstraße 51, 52074, Aachen, Germany.
Mauricio A Trujillo-RoldánPrograma de Investigación de Producción de Biomoléculas, Unidad de Bioprocesos, Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, AP. 70228, CP. 04510, Ciudad de México, Mexico. maurotru@gmail.com.ORCID http://orcid.org/0000-0002-7497-4452
Universidad Nacional Autónoma de México · MXBayer (Germany) · DERWTH Aachen University · DE

Funding

Consejo Nacional de Ciencia y Tecnología 178528Consejo Nacional de Ciencia y Tecnología 220795Consejo Nacional de Ciencia y Tecnología 234599Consejo Nacional de Ciencia y Tecnología 247473Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México 208415Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México IN-209113Universidad Nacional Autónoma de México I0-Programa Biomoléculas
6 · The paper itself

Abstract

backgroundIn Streptomyces, understanding the switch from primary to secondary metabolism is important for maximizing the production of secondary metabolites such as antibiotics, as well as for optimizing recombinant glycoprotein production. Differences in Streptomyces lividans bacterial aggregation as well as recombinant glycoprotein production and O-mannosylation have been reported due to modifications in the shake flask design. We hypothetized that such differences are related to the metabolic switch that occurs under oxygen-limiting conditions in the cultures.

resultsShake flask design was found to affect undecylprodigiosin (RED, a marker of secondary metabolism) production; the RED yield was 12 and 385 times greater in conventional normal Erlenmeyer flasks (NF) than in baffled flasks (BF) and coiled flasks (CF), respectively. In addition, oxygen transfer rates (OTR) and carbon dioxide transfer rates were almost 15 times greater in cultures in CF and BF as compared with those in NF. Based on these data, we obtained respiration quotients (RQ) consistent with aerobic metabolism for CF and BF, but an RQ suggestive of anaerobic metabolism for NF.

conclusionAlthough the metabolic switch is usually related to limitations in phosphate and nitrogen in Streptomyces sp., our results reveal that it can also be activated by low OTR, dramatically affecting recombinant glycoprotein production and O-mannosylation and increasing RED synthesis in the process.

Indexed as

BioreactorsKineticsMetabolic Networks and PathwaysOxygenProdigiosinRecombination, GeneticSpectroscopy, Fourier Transform InfraredStreptomyces lividansOxygenProdigiosinundecylprodigiosinMetabolic switchOrbital shakingOxygen transfer rateRecombinant glycoproteinsShaken bioreactorsStreptomyces lividansUndecylprodigiosin

Identifiers

PMID30486842
PMCPMC6260694
OpenAlexW2902617013

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.