Evidence map›Paper›PMID 30486603›Full record

ArticleAsian Pacific journal of cancer prevention : APJCP2018

Prevalence of Epstein–Barr Virus Genotypes in Pakistani Lymphoma Patients

Sadia Salahuddin, Jabbar Khan, Joharia Azhar, Christopher B. Whitehurst, Ishtiaq Qadri, Julia Shackelford, Joseph S Pagano, Dost Muhammad, Kristy L Richards

Abstract read
In one paragraph

Article in Asian Pacific journal of cancer prevention : APJCP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sadia SalahuddinDepartment of Biological Sciences, Gomal University, Dera Ismail Khan, Pakistan.
Jabbar Khan
Joharia Azhar
Christopher B. Whitehurst
Ishtiaq Qadri
Julia Shackelford
Joseph S Pagano
Dost Muhammad
Kristy L Richards

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Targeted Therapies for HIV-Associated Kaposi Sarcoma and LymphomaR01CA163217 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLOSSOM A DAMANIA, Dirk P Dittmer · 2011 to 2026
$5.5M
(PQD5) A novel genetic strategy to predict efficacy of anti-CD20 antibodiesR01CA185372 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RICHARDS, KRISTY L · 2014 to 2017
$1.3M
NCI NIH HHS R01 CA163217NCI NIH HHS R01 CA185372NIAID NIH HHS P30 AI050410
6 · The paper itself

Abstract

The Epstein-Barr virus (EBV) is a herpesvirus infecting more than 90% of the human population. The tropism of EBV for B lymphocytes is evidenced in its association with many lymphoproliferative disorders. Different types of EBV (EBV-1 and EBV-2), classified on the basis of EBV nuclear antigen-2 (EBNA-2) genotyping, have been reported in benign and malignant pathologies, but there is almost no information about their frequency in the Pakistani population. The aim of this study was to determine the frequency and distribution of EBNA-2-based EBV genotypes in lymphoma patients. Genomic DNA was extracted from formalin-fixed paraffin embedded (FFPE) tissue samples obtained from 73 EBV-DNA-positive lymphoma patients. The β-globin gene was amplified to assess the presence and quality of cellular DNA from all samples. EBER-1 DNA was detected by PCR to confirm EBV presence in tissue samples. EBNA-1 mRNA relative quantification done by quantitative PCR substantiated EBNA-1 mRNA overexpression in 43.8% of EBV-positive cases in comparison to EBV-positive control cell line. EBNA-2 genotyping was done by nested PCR. Among typable samples, EBV-1 was found in 90.7% of samples while EBV-2 was present in 9.3% cases. These results show that EBV-1 was the most prevalent type in the lymphoma population of Pakistan. This epidemiology of EBV in Pakistani lymphoma patients represents an important first step in using EBV for prognosis and monitoring treatment response.

Indexed as

AdolescentAdultAgedAged, 80 and overChildChild, PreschoolEpstein-Barr Virus InfectionsEpstein-Barr Virus Nuclear AntigensFemaleFollow-Up StudiesGenotypeHerpesvirus 4, HumanHumansLymphomaMaleMiddle AgedEBNA-2 protein, Human herpesvirus 4Epstein-Barr Virus Nuclear AntigensViral ProteinsBarr VirusEpsteinGenotypingLymphomaPCRβ-globin gene

Identifiers

PMID30486603
PMCPMC6318387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.