Evidence map›Paper›PMID 30485564›Full record

ArticleMolecular microbiology2019

Organization and architecture of AggR-dependent promoters from enteroaggregative Escherichia coli.

Muhammad Yasir, Christopher Icke, Radwa Abdelwahab, James R Haycocks, Rita E Godfrey, Pavelas Sazinas, Mark J Pallen, Ian R Henderson, Stephen J W Busby, Douglas F Browning

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. EnteroaggregativeEcoSal Plus · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Transcription activation inEcoSal Plus · 2024
    Review
  6. Article
  7. A Mini-Review of EnteroaggregativePolish journal of microbiology · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Virulence Factors of Enteric PathogenicInternational journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Muhammad YasirInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Christopher IckeInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Radwa AbdelwahabInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
James R HaycocksInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Rita E GodfreyInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Pavelas SazinasDepartment of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark.
Mark J PallenQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UA, UK.
Ian R HendersonInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Stephen J W BusbyInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.
Douglas F BrowningInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK.ORCID 0000-0003-4672-3514
University of Birmingham · GBNorwich Research Park · GBTechnical University of Denmark · DK

Funding

Darwin Trust of Edinburgh PhD studentshipIndustrial Biotechnology Catalyst (Innovate UK, BBSRC, EPSRC)
6 · The paper itself

Abstract

Enteroaggregative Escherichia coli (EAEC), is a diarrhoeagenic human pathogen commonly isolated from patients in both developing and industrialized countries. Pathogenic EAEC strains possess many virulence determinants, which are thought to be involved in causing disease, though, the exact mechanism by which EAEC causes diarrhoea is unclear. Typical EAEC strains possess the transcriptional regulator, AggR, which controls the expression of many virulence determinants, including the attachment adherence fimbriae (AAF) that are necessary for adherence to human gut epithelial cells. Here, using RNA-sequencing, we have investigated the AggR regulon from EAEC strain 042 and show that AggR regulates the transcription of genes on both the bacterial chromosome and the large virulence plasmid, pAA2. Due to the importance of fimbriae, we focused on the two AAF/II fimbrial gene clusters in EAEC 042 (afaB-aafCB and aafDA) and identified the promoter elements and AggR-binding sites required for fimbrial expression. In addition, we examined the organization of the fimbrial operon promoters from other important EAEC strains to understand the rules of AggR-dependent activation. Finally, we generated a series of semi-synthetic promoters to define the minimal sequence required for AggR-mediated activation and show that the correct positioning of a single AggR-binding site is sufficient to confer AggR-dependence.

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticRegulonBinding SitesDNA, BacterialEscherichia coliEscherichia coli ProteinsGene Expression ProfilingProtein BindingSequence Analysis, RNATrans-ActivatorsAggR protein, E coliDNA, BacterialEscherichia coli ProteinsTrans-Activators

Identifiers

PMID30485564
PMCPMC6392122
OpenAlexW2903119349

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.