Evidence map›Paper›PMID 30484769›Full record

ArticleeLife2018

Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome.

Srivarsha Rajshekar, Jun Yao, Paige K Arnold, Sara G Payne, Yinwen Zhang, Teresa V Bowman, Robert J Schmitz, John R Edwards, Mary Goll

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The emerging H3K9me3 chromatin landscape during zebrafish embryogenesis.bioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. The gut microbiome and hypertension.Nature reviews. Nephrology · 2023
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Srivarsha RajshekarProgram in Biochemistry and Structural Biology, Cell and Developmental Biology, and Molecular Biology, Weill Cornell Graduate School of Medical Sciences, Cornell University, New York, United States.ORCID 0000-0002-5224-5531
Jun YaoDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.
Paige K ArnoldLouis V. Gerstner Jr. Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, United States.
Sara G PayneDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, New York, United States.ORCID 0000-0002-3572-9112
Yinwen ZhangInstitute of Bioinformatics, University of Georgia, Athens, United States.
Teresa V BowmanDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, New York, United States.
Robert J SchmitzDepartment of Genetics, University of Georgia, Georgia, United States.
John R EdwardsDepartment of Medicine, Center for Pharmacogenomics, Washington University in St. Louis School of Medicine, Missouri, United States.
Mary GollDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.ORCID 0000-0001-5003-6958
Memorial Sloan Kettering Cancer Center · USAlbert Einstein College of Medicine · USUniversity of Georgia · USWashington University in St. Louis · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Heterochromatin in the developing vertebrate embryoR01GM110092 · NIGMS · UNIVERSITY OF GEORGIA · PI GOLL, MARY GRACE · 2014 to 2018
$1.7M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM110092NIH HHS R01GM110092
6 · The paper itself

Abstract

Pericentromeric satellite repeats are enriched in 5-methylcytosine (5mC). Loss of 5mC at these sequences is common in cancer and is a hallmark of Immunodeficiency, Centromere and Facial abnormalities (ICF) syndrome. While the general importance of 5mC is well-established, the specific functions of 5mC at pericentromeres are less clear. To address this deficiency, we generated a viable animal model of pericentromeric hypomethylation through mutation of the ICF-gene Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).

Indexed as

CentromereDNA MethylationAnimalsDisease Models, AnimalFaceGene Knockout TechniquesImmunity, InnateImmunologic Deficiency SyndromesInterferonsPrimary Immunodeficiency DiseasesZebrafishInterferonschromosomesDNA methylationgene expressionICF Syndromeinterferon responsepericentromereszebrafish

Identifiers

PMID30484769
PMCPMC6261255
OpenAlexW2888684672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.