Evidence map›Paper›PMID 30484625›Full record

ArticleACS chemical biology2018

Extender Unit Promiscuity and Orthogonal Protein Interactions of an Aminomalonyl-ACP Utilizing Trans-Acyltransferase from Zwittermicin Biosynthesis.

Samantha M Carpenter, Gavin J Williams

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Current State-of-the-Art Toward Chemoenzymatic Synthesis of Polyketide Natural Products.Chembiochem : a European journal of chemical biology · 2023
    Review
  3. Article
  4. Synthetic biology enabling access to designer polyketides.Current opinion in chemical biology · 2020
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Samantha M CarpenterDepartment of Chemistry , North Carolina State University , Raleigh , North Carolina 27695-8204 , United States.
Gavin J WilliamsDepartment of Chemistry , North Carolina State University , Raleigh , North Carolina 27695-8204 , United States.ORCID 0000-0003-2172-9063

Funding

Synthetic Biology Approach to Regioselectively Modified PolyketidesR01GM104258 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI WILLIAMS, GAVIN J · 2013 to 2017
$1.4M
NIGMS NIH HHS R01 GM104258
6 · The paper itself

Abstract

Trans-acting acyltransferases (trans-ATs) are standalone enzymes that select and deliver extender units to polyketide synthase assembly lines. Accordingly, there is interest in leveraging trans-ATs as tools to regioselectively diversify polyketide structures. Yet, little is known regarding the extender unit and acyl carrier protein (ACP) specificity of trans-ATs, particularly those that utilize unusual ACP-linked extender units. For example, the biosynthesis of the antibiotic zwittermicin involves the trans-AT ZmaF, which is responsible for installing a rare ACP-linked aminomalonyl extender unit. Here, we developed a method to access a panel of non-natural and non-native ACP-linked extender units and used it to probe the promiscuity of ZmaF, revealing one of the most promiscuous ATs characterized to date. Furthermore, we demonstrated that ZmaF is highly orthogonal with respect to its ACP specificity, and the ability of ZmaF to trans-complement noncognate PKS modules was also explored. Together, these results set the stage for further engineering ZmaF as a tool for polyketide diversification.

Indexed as

Acyl Carrier ProteinAcyltransferasesBacillus thuringiensisBacterial ProteinsBase SequenceCatalytic DomainCoenzyme A LigasesEscherichia coliKineticsMolecular Docking SimulationMolecular Dynamics SimulationPolyketide SynthasesProtein BindingProtein EngineeringRhizobiumSubstrate SpecificityAcyl Carrier ProteinAcyltransferasesBacterial ProteinsCoenzyme A Ligasesphosphopantetheinyl transferasePolyketide SynthasesTransferases (Other Substituted Phosphate Groups)

Identifiers

PMID30484625
PMCPMC6470042

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.