Evidence map›Paper›PMID 30483831›Full record

ArticleEuropean biophysics journal : EBJ2019

The correlation of crystalline and elemental composition of urinary stones with a history of bacterial infections: TXRF, XRPD and PCR-DGGE studies.

Michał Arabski, Ilona Stabrawa, Aldona Kubala-Kukuś, Katarzyna Gałczyńska, Dariusz Banaś, Łukasz Piskorz, Ewa Forma, Magdalena Bryś, Waldemar Różański, Marek Lipiński

Open access · hybridAbstract read
In one paragraph

Article in European biophysics journal : EBJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Michał ArabskiDepartment of Biochemistry and Genetics, Institute of Biology, Jan Kochanowski University, Świętokrzyska St. 15, 25-406, Kielce, Poland. arabski@ujk.edu.pl.
Ilona StabrawaInstitute of Physics, Jan Kochanowski University, Świętokrzyska St. 15, 25-406, Kielce, Poland.
Aldona Kubala-KukuśInstitute of Physics, Jan Kochanowski University, Świętokrzyska St. 15, 25-406, Kielce, Poland.
Katarzyna GałczyńskaDepartment of Biochemistry and Genetics, Institute of Biology, Jan Kochanowski University, Świętokrzyska St. 15, 25-406, Kielce, Poland.
Dariusz BanaśInstitute of Physics, Jan Kochanowski University, Świętokrzyska St. 15, 25-406, Kielce, Poland.
Łukasz PiskorzSt. John's God Hospital, Kosynierów Gdyńskich St. 61, 93-357, Łódź, Poland.
Ewa FormaDepartment of Cytobiochemistry, Faculty of Biology and Environmental Protection, University of Lodz, Pomorska St. 141/143, 90-236, Łódź, Poland.
Magdalena BryśDepartment of Cytobiochemistry, Faculty of Biology and Environmental Protection, University of Lodz, Pomorska St. 141/143, 90-236, Łódź, Poland.
Waldemar Różański2nd Department of Urology, Medical University of Lodz, Pabianicka St. 62, 93-513, Łódź, Poland.
Marek Lipiński2nd Department of Urology, Medical University of Lodz, Pabianicka St. 62, 93-513, Łódź, Poland.
Holy Cross University · PLJan Kochanowski University · PLMedical University of Lodz · PLUniversity of Łódź · PL

Funding

European Regional Development Fund POPW.01.01.00-26-013/09-04
6 · The paper itself

Abstract

The aim of this study was to analyze the correlation between past bacterial infections and the type and chemical composition of urinary stones experienced by human patients. Bacteria have been recognized to contribute to urinary stones; however, the role of uropathogens in the development of specific stones has not been extensively investigated. The detection of past bacterial infection (eleven different bacterial species) in urinary stones from 83 patients was made on a DNA level using polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) and correlated with the chemical composition of urinary stones measured using X-ray powder diffraction (XPRD) technique and their elemental composition by total reflection X-ray fluorescence (TXRF). In this study, two scenarios of urinary stones formation mediated by Proteus sp. or Escherichia coli are presented. The first one is associated with Proteus spp. which dominated in 84% of infectious urinary stones and is strongly correlated with struvite and calcium phosphate, in whose matrix additionally strontium, phosphorus, potassium, nickel and zinc are detected. The formation of these stones is closely correlated with urease activity. The second scenario for urinary stone mineralization is associated with E. coli identified in weddellite stones, in which matrix iron was detected. In conclusion, the statistical correlations of bacterial infections with crystalline and elemental composition showed that in mixed bacterial infections, one scenario dominated and excluded the second one.

Indexed as

Denaturing Gradient Gel ElectrophoresisPolymerase Chain ReactionSpectrometry, X-Ray EmissionX-Ray DiffractionBacterial InfectionsFemaleHumansMaleUrinary CalculiEscherichia coliPCR-DGGEProteus spp.TXRFUrinary stonesXPRD

Identifiers

PMID30483831
PMCPMC6330562
OpenAlexW2902475591

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.