Evidence map›Paper›PMID 30482845›Full record

ArticleMolecular & cellular proteomics : MCP2019

Surface Loops in a Single SH2 Domain Are Capable of Encoding the Spectrum of Specificity of the SH2 Family.

Huadong Liu, Haiming Huang, Courtney Voss, Tomonori Kaneko, Wen Tao Qin, Sachdev Sidhu, Shawn S-C Li

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. bioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Engineering SH2 Domains with Tailored Specificities and Affinities.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  6. SH2 Domains: Folding, Binding and Therapeutical Approaches.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. SH2 Domain Binding: Diverse FLVRs of Partnership.Frontiers in endocrinology · 2020
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Huadong LiuCenter for Mitochondrial Biology and Medicine, The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China;; Department of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario N6A 5C1.
Haiming HuangDonnelly Centre for Cellular and Biomolecular Research, 160 College St., Toronto ON M5S 3E1, Canada.
Courtney VossDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario N6A 5C1.
Tomonori KanekoDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario N6A 5C1.
Wen Tao QinDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario N6A 5C1.
Sachdev SidhuDonnelly Centre for Cellular and Biomolecular Research, 160 College St., Toronto ON M5S 3E1, Canada. Electronic address: sachdev.sidhu@utoronto.ca.
Shawn S-C LiDepartment of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, Ontario N6A 5C1;. Electronic address: sli@uwo.ca.
Western University · CAOccupational Cancer Research Centre · CA

Funding

OLFACTORY RECEPTORSF32DC000190 · NIDCD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ZHANG, YINONG · 1995 to 1998
–
CIHRNIDCD NIH HHS F32 DC000190
6 · The paper itself

Abstract

Src homology 2 (SH2) domains play an essential role in cellular signal transduction by binding to proteins phosphorylated on Tyr residue. Although Tyr phosphorylation (pY) is a prerequisite for binding for essentially all SH2 domains characterized to date, different SH2 domains prefer specific sequence motifs C-terminal to the pY residue. Because all SH2 domains adopt the same structural fold, it is not well understood how different SH2 domains have acquired the ability to recognize distinct sequence motifs. We have shown previously that the EF and BG loops that connect the secondary structure elements on an SH2 domain dictate its specificity. In this study, we investigated if these surface loops could be engineered to encode diverse specificities. By characterizing a group of SH2 variants selected by different pY peptides from phage-displayed libraries, we show that the EF and BG loops of the Fyn SH2 domain can encode a wide spectrum of specificities, including all three major specificity classes (

Indexed as

AnimalsCrystallography, X-RayGenetic VariationHumansLigandsModels, MolecularPeptide LibraryProtein Structure, SecondaryProto-Oncogene Proteins c-fynsrc Homology DomainsFYN protein, humanLigandsPeptide LibraryProto-Oncogene Proteins c-fynAntibioticsAutophagyBreast CancerCancer BiologyCancer Stem CellsChemoresistanceClinical ProteomicsMitochondriaMitochondria Function or BiologyNMRNMR-metabolomicStem Cells

Identifiers

PMID30482845
PMCPMC6356082
OpenAlexW2902742859

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.