Evidence map›Paper›PMID 30482836›Full record

ArticlemBio2018

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements.

Jay Worley, Jianghong Meng, Marc W Allard, Eric W Brown, Ruth E Timme

Abstract read
In one paragraph

Article in mBio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Emergence of blaBMC microbiology · 2026
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  5. Ceftriaxone-resistantOne health (Amsterdam, Netherlands) · 2025
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  6. Epidemiology of NontyphoidalAnnals of laboratory medicine · 2025
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  7. Applied and environmental microbiology · 2025
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  11. Longitudinal study highlights patterns ofFrontiers in microbiology · 2025
    Article
  12. Towards decentralization ofFrontiers in microbiology · 2025
    Article
  13. Phylogeny and divergence of the 100 most commonFrontiers in microbiology · 2025
    Article
  14. Article
  15. Article
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  18. mBio · 2024
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  19. Article
  20. A novel approach for detectingFrontiers in microbiology · 2024
    Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jay WorleyJoint Institute for Food Safety and Applied Nutrition, University of Maryland, College Park, Maryland, USA worley.jn@gmail.com ruth.timme@fda.hhs.gov.ORCID 0000-0002-5923-1159
Jianghong MengJoint Institute for Food Safety and Applied Nutrition, University of Maryland, College Park, Maryland, USA.
Marc W AllardCenter for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, USA.
Eric W BrownCenter for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, USA.
Ruth E TimmeCenter for Food Safety & Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, USA worley.jn@gmail.com ruth.timme@fda.hhs.gov.ORCID 0000-0002-9705-5897

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using whole-genome sequence (WGS) data from the GenomeTrakr network, a globally distributed network of laboratories sequencing foodborne pathogens, we present a new phylogeny of

Indexed as

Genome, BacterialInterspersed Repetitive SequencesPhylogenyCluster AnalysisComputational BiologyPlasmidsPolymorphism, Single NucleotideSalmonella entericaSalmonella PhagesSequence HomologyVirulence FactorsWhole Genome SequencingVirulence FactorsGenomeTrakrphylogenyplasmidsSalmonellavirulencewhole-genome sequencing

Identifiers

PMID30482836
PMCPMC6282209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.