Evidence map›Paper›PMID 30482800›Full record

ArticleG3 (Bethesda, Md.)2019

Dosage Compensation and Gene Expression of the X Chromosome in Sheep.

Jingyue Ellie Duan, Kaleigh Flock, Nathanial Jue, Mingyuan Zhang, Amanda Jones, Sahar Al Seesi, Ion Mandoiu, Sambhu Pillai, Maria Hoffman, Rachel O'Neill and 6 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Do male and female heterogamety really differ in expression regulation? Lack of global dosage balance in pygopodid geckos.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  5. Parasitology · 2021
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Jingyue Ellie DuanDepartment of Animal Science.ORCID 0000-0001-6416-2250
Kaleigh FlockDepartment of Animal Science.
Nathanial JueSchool of Natural Sciences, California State University, Monterey Bay, Seaside, CA 93955.
Mingyuan ZhangDepartment of Animal Science.ORCID 0000-0001-6143-2200
Amanda JonesDepartment of Animal Science.ORCID 0002-1258-8687
Sahar Al SeesiSmith College Department of Computer Science, Northampton, MA 01063.
Ion MandoiuDepartment of Computer Science.ORCID 0000-0002-4818-0237
Sambhu PillaiDepartment of Animal Science.
Maria HoffmanDepartment of Animal Science.
Rachel O'NeillDepartment of Molecular and Cell Biology, and University of Connecticut, Storrs, CT, 06269.
Steven ZinnDepartment of Animal Science.
Kristen GovoniDepartment of Animal Science.
Sarah ReedDepartment of Animal Science.ORCID 0000-0002-9961-6280
Hesheng JiangCollege of Animal Science and Technology, Guangxi University, Nanning 530004, China, and.ORCID 0000-0002-6168-1810
Zongliang Carl JiangDepartment of Animal Science.ORCID 0000-0002-3040-7771
Xiuchun Cindy TianDepartment of Animal Science, xiuchun.tian@uconn.edu.ORCID 0000-0002-8441- 2154
California State University, Monterey Bay · USGuangxi Medical University · CNGuangxi University · CNLouisiana State University · USSmith College · USUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ohno's hypothesis predicts that the expression of the single X chromosome in males needs compensatory upregulation to balance its dosage with that of the diploid autosomes. Additionally, X chromosome inactivation ensures that quadruple expression of the two X chromosomes is avoided in females. These mechanisms have been actively studied in mice and humans but lag behind in domestic species. Using RNA sequencing data, we analyzed the X chromosome upregulation in sheep fetal tissues from day 135 of gestation under control, over or restricted maternal diets (100%, 140% and 60% of National Research Council Total Digestible Nutrients), and in conceptuses, juvenile, and adult somatic tissues. By computing the mean expression ratio of all X-linked genes to all autosomal genes (X:A), we found that all samples displayed some levels of X chromosome upregulation. The degrees of X upregulation were not significant (P-value = 0.74) between ovine females and males in the same somatic tissues. Brain, however, displayed complete X upregulation. Interestingly, the male and female reproduction-related tissues exhibited divergent X dosage upregulation. Moreover, expression upregulation of the X chromosome in fetal tissues was not affected by maternal diets. Maternal nutrition, however, did change expression levels of several X-linked genes, such as sex determination genes

Indexed as

Dosage Compensation, GeneticAnimalsFemaleGene Expression Regulation, DevelopmentalGenes, X-LinkedHumansMaleSequence Analysis, RNASheepX ChromosomeX Chromosome InactivationMaternal nutritionOhno’s hypothesisOvineX chromosome upregulation

Identifiers

PMID30482800
PMCPMC6325915
OpenAlexW2902596932

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.