Evidence map›Paper›PMID 30482228›Full record

ArticleParasites & vectors2018

Spliceosomal introns in Trichomonas vaginalis revisited.

Shuqi E Wang, Abdul S Amir, Tai Nguyen, Anthony M Poole, Augusto Simoes-Barbosa

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shuqi E WangSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Abdul S AmirSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Tai NguyenSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Anthony M PooleSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.
Augusto Simoes-BarbosaSchool of Biological Sciences, University of Auckland, Auckland, New Zealand. a.barbosa@auckland.ac.nz.ORCID http://orcid.org/0000-0003-2461-1917
University of Auckland · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe human protozoan parasite Trichomonas vaginalis is an organism of interest for understanding eukaryotic evolution. Despite having an unusually large genome and a rich gene repertoire among protists, spliceosomal introns in T. vaginalis appear rare: only 62 putative introns have been annotated in this genome, and little or no experimental evidence exists to back up these predictions.

resultsThis study revisited the 62 annotated introns of T. vaginalis derived from the genome sequencing plus previous publications. After experimental validation and a new genome-wide search, we confirmed the presence of introns in 32 genes and 18 others were concluded to be intronless. Sequence analyses classified the validated introns into two types, based on distinctive features such as length and conservation of splice site motifs.

conclusionsOur study provides an updated list of intron-containing genes in the genome of T. vaginalis. Our findings suggests the existence of two intron 'families' spread among T. vaginalis protein-coding genes. Additional studies are needed to understand the functional separation of these two classes of introns and to assess the existence of further introns in the T. vaginalis genome.

Indexed as

Genome, ProtozoanIntronsRNA SplicingSpliceosomesAnimalsConserved SequenceEvolution, MolecularHumansPhylogenyRNA, Small NuclearSequence Analysis, DNATrichomonas vaginalisRNA, Small NuclearDeep-branching eukaryoteIntronsSpliceosomeSplicingTrichomonas vaginalis

Identifiers

PMID30482228
PMCPMC6260720
OpenAlexW2902507102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.