Evidence map›Paper›PMID 30481168›Full record

ArticlePLoS computational biology2018

Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch.

Lina Meinecke, Praveer P Sharma, Huijing Du, Lei Zhang, Qing Nie, Thomas F Schilling

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Endothelin signaling in development.Development (Cambridge, England) · 2023
    Review
  4. Article
  5. Article
  6. Neural crest development: insights from the zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Lina MeineckeDepartment of Mathematics, University of California, Irvine, CA, United States of America.
Praveer P SharmaCenter for Complex Biological Systems, University of California, Irvine, CA, United States of America.ORCID 0000-0003-0502-7846
Huijing DuDepartment of Mathematics, University of Nebraska, Lincoln, NE, United States of America.
Lei ZhangBeijing International Center for Mathematical Research, Peking University, Beijing, China.ORCID 0000-0001-9972-2051
Qing NieDepartment of Mathematics, University of California, Irvine, CA, United States of America.
Thomas F SchillingCenter for Complex Biological Systems, University of California, Irvine, CA, United States of America.ORCID 0000-0003-1798-8695
University of California, Irvine · USPeking University · CNUniversity of Nebraska–Lincoln · US

Funding

THE ROLE OF ATROPHIN-2 IN CARTILAGE PATTERNING AND POLARITY IN ZEBRAFISHR01DE013828 · NIDCR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SCHILLING, THOMAS F · 2001 to 2025
$9.1M
Regulation of Morphogenesis and Extracellular Matrix Assembly at the Myotendinous JunctionR01AR067797 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Thomas F Schilling · 2016 to 2026
$3.5M
Multiscale Models of Wound Cell Plasticity for RegenerationU01AR073159 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING, NIE, QING · 2018 to 2022
$3.5M
Defining an Integrated Signaling Network That Patterns the Craniofacial SkeletonR01DE023050 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI CLOUTHIER, DAVID E., NIE, QING · 2014 to 2018
$3.2M
Stochastic Dynamics and Noise Control in Patterning SystemsR01GM107264 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI NIE, QING, SCHILLING, THOMAS F · 2014 to 2017
$1.3M
NIAMS NIH HHS R01 AR067797NIAMS NIH HHS U01 AR073159NIDCR NIH HHS R01 DE013828NIDCR NIH HHS R01 DE023050NIGMS NIH HHS R01 GM107264
6 · The paper itself

Abstract

How does pattern formation occur accurately when confronted with tissue growth and stochastic fluctuations (noise) in gene expression? Dorso-ventral (D-V) patterning of the mandibular arch specifies upper versus lower jaw skeletal elements through a combination of Bone morphogenetic protein (Bmp), Endothelin-1 (Edn1), and Notch signaling, and this system is highly robust. We combine NanoString experiments of early D-V gene expression with live imaging of arch development in zebrafish to construct a computational model of the D-V mandibular patterning network. The model recapitulates published genetic perturbations in arch development. Patterning is most sensitive to changes in Bmp signaling, and the temporal order of gene expression modulates the response of the patterning network to noise. Thus, our integrated systems biology approach reveals non-intuitive features of the complex signaling system crucial for craniofacial development, including novel insights into roles of gene expression timing and stochasticity in signaling and gene regulation.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBody PatterningBone Morphogenetic ProteinsBranchial RegionCell AdhesionComputer SimulationGene Expression RegulationGreen Fluorescent ProteinsMandibleReproducibility of ResultsSignal TransductionStochastic ProcessesTransgenesZebrafishZebrafish ProteinsBone Morphogenetic ProteinsGreen Fluorescent ProteinsZebrafish Proteins

Identifiers

PMID30481168
PMCPMC6258504
OpenAlexW2902421627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.