Evidence map›Paper›PMID 30480765›Full record

ArticleCancer2019

Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery.

Giorgia Simonetti, Antonella Padella, Italo Farìa do Valle, Maria Chiara Fontana, Eugenio Fonzi, Samantha Bruno, Carmen Baldazzi, Viviana Guadagnuolo, Marco Manfrini, Anna Ferrari and 23 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 8 institutions in 5 countries.

Giorgia SimonettiDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Antonella PadellaDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Italo Farìa do ValleDepartment of Physics and Astronomy, University of Bologna, Bologna, Italy.
Maria Chiara FontanaDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Eugenio FonziDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Samantha BrunoDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Carmen BaldazziDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Viviana GuadagnuoloDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Marco ManfriniDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Anna FerrariDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Stefania PaoliniDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Cristina PapayannidisDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Giovanni MarconiDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Eugenia FranchiniDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Elisa ZuffaDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Maria Antonella LaginestraDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Federica ZanottiDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Annalisa AstolfiGiorgio Prodi Cancer Research Center, University of Bologna, Bologna, Italy.
Ilaria IacobucciDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Simona BernardiUnit of Blood Diseases and Stem Cell Transplantation, University of Brescia, Brescia, Italy.
Marco SazziniDepartment of Biological Geological and Environmental Sciences, University of Bologna, Bologna, Italy.
Elisa FicarraPolitecnico di Torino, Turin, Italy.
Jesus Maria HernandezFundación de Investigación del Cáncer de la Universidad de Salamanca, Salamanca, Spain.
Peter VandenbergheKatholieke Universiteit Leuven, Leuven, Belgium.
Jan CoolsKatholieke Universiteit Leuven, Leuven, Belgium.
Lars BullingerUniversity Hospital of Ulm, Ulm, Germany.
Emanuela OttavianiDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Nicoletta TestoniDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Michele CavoDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
Torsten HaferlachMunich Leukemia Laboratory, Munich, Germany.
Gastone CastellaniDepartment of Physics and Astronomy, University of Bologna, Bologna, Italy.
Daniel RemondiniDepartment of Physics and Astronomy, University of Bologna, Bologna, Italy.
Giovanni MartinelliDepartment of Experimental, Diagnostic, and Specialty Medicine, University of Bologna and L. e A. Seràgnoli Institute of Hematology, Bologna, Italy.
University of Bologna · ITKU Leuven · BECentro de Investigación del Cáncer · ESMinistry of Education · BRMunich Leukemia Laboratory (Germany) · DEPolytechnic University of Turin · ITUniversity Hospital Ulm · DEUniversity of Brescia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAneuploidy occurs in more than 20% of acute myeloid leukemia (AML) cases and correlates with an adverse prognosis.

methodsTo understand the molecular bases of aneuploid acute myeloid leukemia (A-AML), this study examined the genomic profile in 42 A-AML cases and 35 euploid acute myeloid leukemia (E-AML) cases.

resultsA-AML was characterized by increased genomic complexity based on exonic variants (an average of 26 somatic mutations per sample vs 15 for E-AML). The integration of exome, copy number, and gene expression data revealed alterations in genes involved in DNA repair (eg, SLX4IP, RINT1, HINT1, and ATR) and the cell cycle (eg, MCM2, MCM4, MCM5, MCM7, MCM8, MCM10, UBE2C, USP37, CK2, CK3, CK4, BUB1B, NUSAP1, and E2F) in A-AML, which was associated with a 3-gene signature defined by PLK1 and CDC20 upregulation and RAD50 downregulation and with structural or functional silencing of the p53 transcriptional program. Moreover, A-AML was enriched for alterations in the protein ubiquitination and degradation pathway (eg, increased levels of UHRF1 and UBE2C and decreased UBA3 expression), response to reactive oxygen species, energy metabolism, and biosynthetic processes, which may help in facing the unbalanced protein load. E-AML was associated with BCOR/BCORL1 mutations and HOX gene overexpression.

conclusionsThese findings indicate that aneuploidy-related and leukemia-specific alterations cooperate to tolerate an abnormal chromosome number in AML, and they point to the mitotic and protein degradation machineries as potential therapeutic targets.

Indexed as

Gene Regulatory NetworksAdultAgedAged, 80 and overAneuploidyCell CycleChromosome BandingExome SequencingFemaleGene DosageGene Expression ProfilingGene Expression Regulation, LeukemicGenetic Predisposition to DiseaseGenomicsHumansLeukemia, Myeloid, Acuteacute myeloid leukemiaaneuploidycell cyclegenomicsmutationubiquitinationwhole exome sequencing

Identifiers

PMID30480765
PMCPMC6587451
OpenAlexW2902814870

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.