Evidence map›Paper›PMID 30480660›Full record

ArticleScientific data2018

Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae.

Marco Marconi, Ane Sesma, Julio Luis Rodríguez-Romero, María Lourdes Rosano González, Mark D Wilkinson

Abstract readDataset
In one paragraph

Article in Scientific data, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marco MarconiCentro de Biotecnología y Genómica de Plantas UPM - INIA, Madrid, Spain.
Ane SesmaCentro de Biotecnología y Genómica de Plantas UPM - INIA, Madrid, Spain.
Julio Luis Rodríguez-RomeroCentro de Biotecnología y Genómica de Plantas UPM - INIA, Madrid, Spain.
María Lourdes Rosano GonzálezSwiss Federal Institute of Technology, Zurich, Switzerland.
Mark D WilkinsonCentro de Biotecnología y Genómica de Plantas UPM - INIA, Madrid, Spain.ORCID 0000-0001-6960-357X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyadenylation plays an important role in gene regulation, thus affecting a wide variety of biological processes. In the rice blast fungus Magnaporthe oryzae the cleavage factor I protein Rpb35 is required for pre-mRNA polyadenylation and fungal virulence. Here we present the bioinformatic approach and output data related to a global survey of polyadenylation site usage in M. oryzae wild-type and Δrbp35 strains under a variety of nutrient conditions, some of which simulate the conditions experienced by the fungus during part of its infection cycle.

Indexed as

Chromosome MappingMagnaportheGenome, FungalOryzaPlant DiseasesPolyadenylationSequence Analysis, RNA

Identifiers

PMID30480660
PMCPMC6257040

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.