Evidence map›Paper›PMID 30479346›Full record

ArticleNature communications2018

Dual HLA B*42 and B*81-reactive T cell receptors recognize more diverse HIV-1 Gag escape variants.

Funsho Ogunshola, Gursev Anmole, Rachel L Miller, Emily Goering, Thandeka Nkosi, Daniel Muema, Jaclyn Mann, Nasreen Ismail, Denis Chopera, Thumbi Ndung'u and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. T cell antigen discovery.Nature methods · 2021
    Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Funsho OgunsholaAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Gursev AnmoleDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Rachel L MillerFaculty of Health Sciences, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Emily GoeringRagon Institute of MGH, MIT, and Harvard, Cambridge, MA, 02139, USA.
Thandeka NkosiAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Daniel MuemaAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Jaclyn MannHIV Pathogenesis Programme, Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Nasreen IsmailHIV Pathogenesis Programme, Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Denis ChoperaAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Thumbi Ndung'uAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.
Mark A BrockmanDepartment of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada. mark_brockman@sfu.ca.ORCID http://orcid.org/0000-0001-6432-1426
Zaza M NdhlovuAfrica Health Research Institute, University of KwaZulu-Natal, Durban, South Africa. zndhlovu@mgh.harvard.edu.ORCID http://orcid.org/0000-0002-2708-3315
Africa Health Research Institute · ZASimon Fraser University · CARagon Institute of MGH, MIT and Harvard · USUniversity of KwaZulu-Natal · ZAMax Planck Institute for Infection Biology · DE

Funding

BELIEVE: Bench to Bed Enhanced Lymphocyte Infusions to Engineer Viral EradicationUM1AI126617 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI JONES, R. BRAD, NIXON, DOUGLAS F · 2016 to 2020
$28.1M
Demystifying the antiviral activity of the IgG3+ antibody responseR37AI080289 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI ALTER, GALIT · 2015 to 2022
$5.8M
Tuning Fc-effector functions of HIV-specific antibodiesR01AI102660 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI ALTER, GALIT · 2012 to 2015
$3.0M
NIAID NIH HHS R01 AI102660NIAID NIH HHS R37 AI080289NIAID NIH HHS UM1 AI126617Wellcome Trust
6 · The paper itself

Abstract

Some closely related human leukocyte antigen (HLA) alleles are associated with variable clinical outcomes following HIV-1 infection despite presenting the same viral epitopes. Mechanisms underlying these differences remain unclear but may be due to intrinsic characteristics of the HLA alleles or responding T cell repertoires. Here we examine CD8

Indexed as

AdultAmino Acid SequenceCD8-Positive T-LymphocytesClone CellsFemalegag Gene Products, Human Immunodeficiency VirusHIV-1HLA-B AntigensHumansMaleMutationReceptors, Antigen, T-CellReproducibility of ResultsViral LoadYoung Adultgag Gene Products, Human Immunodeficiency VirusHLA-B AntigensReceptors, Antigen, T-Cell

Identifiers

PMID30479346
PMCPMC6258674
OpenAlexW2901153858

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.