Evidence map›Paper›PMID 30478395›Full record

ArticleScientific reports2018

Natural variation in acyl editing is a determinant of seed storage oil composition.

Guillaume N Menard, Fiona M Bryant, Amélie A Kelly, Christian P Craddock, Irene Lavagi, Keywan Hassani-Pak, Smita Kurup, Peter J Eastmond

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Oleic/Linoleic Acid Ratio in Olive (Frontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Guillaume N MenardDepartment of Plant Science, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.ORCID http://orcid.org/0000-0002-2187-9013
Fiona M BryantDepartment of Plant Science, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Amélie A KellyGeorg-August-University, Albrecht-von-Haller-Institute for Plant Sciences, Justus-von-Liebig Weg 11, 37077, Göttingen, Germany.
Christian P CraddockMt. San Jacinto College, Menifee Valley Campus, 28237 La Piedra Road, Menifee, CA, 92584, USA.
Irene LavagiDepartment of Microbiology and Plant Pathology, University of California Riverside, Riverside, CA, 92521, USA.
Keywan Hassani-PakDepartment of Plant Science, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.ORCID http://orcid.org/0000-0001-9625-0511
Smita KurupDepartment of Plant Science, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK.
Peter J EastmondDepartment of Plant Science, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK. peter.eastmond@rothamsted.ac.uk.
Rothamsted Research · GBMt. San Jacinto College · USUniversity of California, Riverside · USUniversity of Göttingen · DE

Funding

Biotechnology and Biological Sciences Research Council BB/E022197/1Biotechnology and Biological Sciences Research Council (BBSRC) BB/E022197/1Biotechnology and Biological Sciences Research Council (BBSRC) BB/K002147/1Biotechnology and Biological Sciences Research Council (BBSRC) BB/P012663/1
6 · The paper itself

Abstract

Seeds exhibit wide variation in the fatty acid composition of their storage oil. However, the genetic basis of this variation is only partially understood. Here we have used a multi-parent advanced generation inter-cross (MAGIC) population to study the genetic control of fatty acid chain length in Arabidopsis thaliana seed oil. We mapped four quantitative trait loci (QTL) for the quantity of the major very long chain fatty acid species 11-eicosenoic acid (20:1), using multiple QTL modelling. Surprisingly, the main-effect QTL does not coincide with FATTY ACID ELONGASE 1 and a parallel genome wide association study suggested that LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 2 (LPCAT2) is a candidate for this QTL. Regression analysis also suggested that LPCAT2 expression and 20:1 content in seeds of the 19 MAGIC founder accessions are related. LPCAT is a key component of the Lands cycle; an acyl editing pathway that enables acyl-exchange between the acyl-Coenzyme A and phosphatidylcholine precursor pools used for microsomal fatty acid elongation and desaturation, respectively. We Mendelianised the main-effect QTL using biparental chromosome segment substitution lines and carried out complementation tests to show that a single cis-acting polymorphism in the LPCAT2 promoter causes the variation in seed 20:1 content, by altering the LPCAT2 expression level and total LPCAT activity in developing siliques. Our work establishes that oilseed species exhibit natural variation in the enzymic capacity for acyl editing and this contributes to the genetic control of storage oil composition.

Indexed as

1-Acylglycerophosphocholine O-AcyltransferaseArabidopsisArabidopsis ProteinsChromosome MappingFatty Acid ElongasesFatty AcidsFatty Acids, MonounsaturatedGene Expression Regulation, PlantGenetic Complementation TestGenome-Wide Association StudyPlant OilsPlants, Genetically ModifiedPromoter Regions, GeneticQuantitative Trait LociSeeds1-Acylglycerophosphocholine O-AcyltransferaseArabidopsis Proteinseicosenoic acidFae1 protein, ArabidopsisFatty Acid ElongasesFatty AcidsFatty Acids, MonounsaturatedPlant Oils

Identifiers

PMID30478395
PMCPMC6255774
OpenAlexW2900746121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.