ArticleScientific reports2018
Complete mitochondrial genome of Black Soft-shell Turtle (Nilssonia nigricans) and comparative analysis with other Trionychidae.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed.
- Conservation insights for the Critically Endangered Black Softshell Turtle (Nilssonia nigricans) through landscape genetics approach in South Asia.Scientific reports · 2026Article
- Evolutionary patterns of the mitochondrial control region in vertebrates: A large-scale comparative analysis.PloS one · 2026Article
- Cladistic Relationships and Landscape Genetics of the Endangered Indian Peacock Softshell TurtleEcology and evolution · 2025Article
- Lineages to landscapes: mitogenomic insights and climate refugia informing proactive conservation of the endangered Tricarinate Hill Turtle (Melanochelys tricarinata) in the Indian subcontinent.Scientific reports · 2025Article
- Unveiling the Evolutionary Lineages and Habitat Dynamics of the Monotypic Crowned River TurtleEcology and evolution · 2025Article
- Comparative analysis of the mitochondrial genomes of the soft-shelled turtles Palea steindachneri and Pelodiscus axenaria and phylogenetic implications for Trionychia.Scientific reports · 2025Article
- Climate-driven mitochondrial selection in lacertid lizards.Ecology and evolution · 2024Article
- Complete Mitochondrial Genomes of FourBiology · 2023Article
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- The Complete Mitochondrial Genome ofGenes · 2022Article
- Complete mitochondrial genome of critically endangeredMitochondrial DNA. Part B, Resources · 2021Article
- Turdoides affinis mitogenome reveals the translational efficiency and importance of NADH dehydrogenase complex-I in the Leiothrichidae family.Scientific reports · 2020Article
- Article
- The first complete mitochondrial genome of the Indian Tent Turtle,Ecology and evolution · 2019Article
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8 authors.
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Abstract
The characterization of mitochondrial genome has been evidenced as an efficient field of study for phylogenetic and evolutionary analysis in vertebrates including turtles. The aim of this study was to distinguish the structure and variability of the Trionychidae species mitogenomes through comparative analysis. The complete mitogenome (16796 bp) of an endangered freshwater turtle, Nilssonia nigricans was sequenced and annotated. The mitogenome encoded for 37 genes and a major non-coding control region (CR). The mitogenome was A + T biased (62.16%) and included six overlapping and 19 intergenic spacer regions. The Relative synonymous codon usage (RSCU) value was consistent among all the Trionychidae species; with the exception of significant reduction of Serine (TCG) frequency in N. nigricans, N. formosa, and R. swinhoei. In N. nigricans, most of the transfer RNAs (tRNAs) were folded into classic clover-leaf secondary structures with Watson-Crick base pairing except for trnS1 (GCT). The comparative analysis revealed that most of the tRNAs were structurally different, except for trnE (TTC), trnQ (TTG), and trnM (CAT). The structural features of tRNAs resulted ≥ 10 mismatched or wobble base pairings in 12 tRNAs, which reflects the nucleotide composition in both H- and L-strands. The mitogenome of N. nigricans also revealed two unique tandem repeats (ATTAT)
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