Evidence map›Paper›PMID 30478312›Full record

ArticleNature communications2018

Structural basis of RIP2 activation and signaling.

Qin Gong, Ziqi Long, Franklin L Zhong, Daniel Eng Thiam Teo, Yibo Jin, Zhan Yin, Zhao Zhi Boo, Yaming Zhang, Jiawen Zhang, Renliang Yang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 104 citations in OpenAlex.

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  12. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 5 countries.

Qin GongSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Ziqi LongSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Franklin L ZhongInstitute of Medical Biology, A*STAR, Singapore, Singapore.
Daniel Eng Thiam TeoInstitute of Medical Biology, A*STAR, Singapore, Singapore.
Yibo JinSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Zhan YinSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Zhao Zhi BooSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Yaming ZhangSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Jiawen ZhangSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Renliang YangSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Shashi BhushanSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore.
Bruno ReversadeInstitute of Medical Biology, A*STAR, Singapore, Singapore.ORCID http://orcid.org/0000-0002-4070-7997
Zongli LiDepartment of Biological Chemistry & Molecular Pharmacology, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA, 02115, USA.
Bin WuSchool of Biological Sciences, Nanyang Technological University, Singapore, 637551, Singapore. wubin@ntu.edu.sg.ORCID http://orcid.org/0000-0002-0883-8006
Nanyang Technological University · SGAgency for Science, Technology and Research · SGHoward Hughes Medical Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Signals arising from bacterial infections are detected by pathogen recognition receptors (PRRs) and are transduced by specialized adapter proteins in mammalian cells. The Receptor-interacting-serine/threonine-protein kinase 2 (RIPK2 or RIP2) is such an adapter protein that is critical for signal propagation of the Nucleotide-binding-oligomerization-domain-containing proteins 1/2 (NOD1 and NOD2). Dysregulation of this signaling pathway leads to defects in bacterial detection and in some cases autoimmune diseases. Here, we show that the Caspase-activation-and-recruitment-domain (CARD) of RIP2 (RIP2-CARD) forms oligomeric structures upon stimulation by either NOD1-CARD or NOD2-2CARD. We reconstitute this complex, termed the RIPosome in vitro and solve the cryo-EM filament structure of the active RIP2-CARD complex at 4.1 Å resolution. The structure suggests potential mechanisms by which CARD domains from NOD1 and NOD2 initiate the oligomerization process of RIP2-CARD. Together with structure guided mutagenesis experiments at the CARD-CARD interfaces, we demonstrate molecular mechanisms how RIP2 is activated and self-propagating such signal.

Indexed as

Signal TransductionAmino Acid SequenceCARD Signaling Adaptor ProteinsCryoelectron MicroscopyHEK293 CellsHumansModels, MolecularProtein BindingProtein DomainsProtein MultimerizationReceptor-Interacting Protein Serine-Threonine Kinase 2Recombinant ProteinsStructure-Activity RelationshipCARD Signaling Adaptor ProteinsReceptor-Interacting Protein Serine-Threonine Kinase 2Recombinant ProteinsRIPK2 protein, human

Identifiers

PMID30478312
PMCPMC6255760
OpenAlexW2900680956

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.