Evidence map›Paper›PMID 30478057›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Coordinated histone modifications and chromatin reorganization in a single cell revealed by FRET biosensors.

Qin Peng, Shaoying Lu, Yuxin Shi, Yijia Pan, Praopim Limsakul, Andrei V Chernov, Juhui Qiu, Xiaoqi Chai, Yiwen Shi, Pengzhi Wang and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  6. Review
  7. Decoding the interplay between mScience advances · 2024
    Article
  8. Article
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  11. Article
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  15. Studying Chromatin Epigenetics with Fluorescence Microscopy.International journal of molecular sciences · 2022
    Review
  16. Review
  17. Article
  18. Development and application of novel BiFC probes for cell sorting based on epigenetic modification.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2022
    Article
  19. Review
  20. Resource for FRET-Based Biosensor Optimization.Frontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Qin PengCollege of Bioengineering, Chongqing University, 400044 Chongqing, China.
Shaoying LuDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093; kalu@eng.ucsd.edu wyl@cqu.edu.cn shuchien@ucsd.edu yiw015@eng.ucsd.edu.
Yuxin ShiDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Yijia PanDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Praopim LimsakulDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Andrei V ChernovInfectious & Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037.
Juhui QiuCollege of Bioengineering, Chongqing University, 400044 Chongqing, China.
Xiaoqi ChaiDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Yiwen ShiDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Pengzhi WangDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Yanmin JiDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Yi-Shuan J LiDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093.
Alex Y StronginInfectious & Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037.
Vladislav V VerkhushaDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, New York, NY 10461.
Juan Carlos Izpisua BelmonteGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037.
Bing RenDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093.
Yuanliang WangCollege of Bioengineering, Chongqing University, 400044 Chongqing, China; kalu@eng.ucsd.edu wyl@cqu.edu.cn shuchien@ucsd.edu yiw015@eng.ucsd.edu.
Shu ChienDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093; kalu@eng.ucsd.edu wyl@cqu.edu.cn shuchien@ucsd.edu yiw015@eng.ucsd.edu.
Yingxiao WangDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093; kalu@eng.ucsd.edu wyl@cqu.edu.cn shuchien@ucsd.edu yiw015@eng.ucsd.edu.ORCID 0000-0003-0265-326X
University of California San Diego · USChongqing University · CNSanford Burnham Prebys Medical Discovery Institute · USAlbert Einstein College of Medicine · USSalk Institute for Biological Studies · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 1985 to 2026
$82.8M
The second phase of NIH Common Fund 4D Nucleome Network Organizational HubU01CA200147 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHONG, SHENG · 2015 to 2024
$22.0M
Role of Spatiotemporal Epigenetic Dynamics in Regulating Endothelial Gene Expressions under FlowsR01HL121365 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHIEN, SHU, WANG, YINGXIAO · 2014 to 2025
$7.5M
Integrative Bioengineering of Heart, Vessels, and BloodT32HL105373 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, INTAGLIETTA, MARCOS · 2010 to 2019
$3.6M
Locus-specific Imaging of Dynamic Histone Methylations during ReprogrammingR01GM125379 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, WANG, YINGXIAO · 2017 to 2020
$2.4M
Multiplex FRET Imaging of Kinase-Epigenome Interregulations in Live Cancer CellsR33CA204704 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, YINGXIAO · 2017 to 2019
$1.1M
Remote-Control Mechano-Genetics and Epigenetics for Live Cell ManipulationR01GM126016 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, YINGXIAO · 2018 to 2020
$1.1M
Engineering Machinery Molecules to Visualize and Actuate ImmunotherapyR21CA209629 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, YINGXIAO · 2017 to 2018
$371k
NCI NIH HHS P30 CA014195NCI NIH HHS R21 CA209629NCI NIH HHS R33 CA204704NCI NIH HHS U01 CA200147NHLBI NIH HHS R01 HL121365NIGMS NIH HHS R01 GM125379NIGMS NIH HHS R01 GM126016
6 · The paper itself

Abstract

The dramatic reorganization of chromatin during mitosis is perhaps one of the most fundamental of all cell processes. It remains unclear how epigenetic histone modifications, despite their crucial roles in regulating chromatin architectures, are dynamically coordinated with chromatin reorganization in controlling this process. We have developed and characterized biosensors with high sensitivity and specificity based on fluorescence resonance energy transfer (FRET). These biosensors were incorporated into nucleosomes to visualize histone H3 Lys-9 trimethylation (H3K9me3) and histone H3 Ser-10 phosphorylation (H3S10p) simultaneously in the same live cell. We observed an anticorrelated coupling in time between H3K9me3 and H3S10p in a single live cell during mitosis. A transient increase of H3S10p during mitosis is accompanied by a decrease of H3K9me3 that recovers before the restoration of H3S10p upon mitotic exit. We further showed that H3S10p is causatively critical for the decrease of H3K9me3 and the consequent reduction of heterochromatin structure, leading to the subsequent global chromatin reorganization and nuclear envelope dissolution as a cell enters mitosis. These results suggest a tight coupling of H3S10p and H3K9me3 dynamics in the regulation of heterochromatin dissolution before a global chromatin reorganization during mitosis.

Indexed as

Chromatin Assembly and DisassemblyHistone CodeBacterial ProteinsBiosensing TechniquesFluorescence Resonance Energy TransferGreen Fluorescent ProteinsHEK293 CellsHeterochromatinHistonesHumansLuminescent ProteinsMitosisModels, BiologicalSingle-Cell AnalysisBacterial Proteinsenhanced cyan fluorescent proteinGreen Fluorescent ProteinsHeterochromatinHistonesLuminescent Proteinsyellow fluorescent protein, Bacteriachromatin reorganizationFRET biosensorshistone modifications

Identifiers

PMID30478057
PMCPMC6294946
OpenAlexW2903410231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.