Evidence map›Paper›PMID 30477169›Full record

ArticleInternational journal of environmental research and public health2018

Whole Genome Sequencing of a Vietnamese Family from a Dioxin Contamination Hotspot Reveals Novel Variants in the Son with Undiagnosed Intellectual Disability.

Dang Ton Nguyen, Hai Ha Nguyen, Thuy Duong Nguyen, Thi Thanh Hoa Nguyen, Kaoru Nakano, Kazuhiro Maejima, Aya Sasaki-Oku, Van Ba Nguyen, Duy Bac Nguyen, Bach Quang Le and 5 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in International journal of environmental research and public health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification of immune infiltration-related ZNF480 for predicting prognosis in breast cancer.American journal of clinical and experimental immunology · 2025
    Article
  4. Heliyon · 2023
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Dang Ton NguyenInstitute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 100000, Vietnam. dtnguyen@igr.ac.vn.ORCID 0000-0003-0182-8996
Hai Ha NguyenInstitute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 100000, Vietnam. nguyenhaiha@igr.ac.vn.ORCID 0000-0002-5431-5935
Thuy Duong NguyenInstitute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 100000, Vietnam. tdnguyen@igr.ac.vn.ORCID 0000-0001-8691-9138
Thi Thanh Hoa NguyenInstitute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 100000, Vietnam. nthoa@igr.ac.vn.
Kaoru NakanoRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. kaoru.nakano@riken.jp.
Kazuhiro MaejimaRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. kazuhiro.maejima@riken.jp.
Aya Sasaki-OkuRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. aya.sasaki@riken.jp.
Van Ba NguyenVietnam Military Medical University, Ha Dong, Hanoi 100000, Vietnam. bsnguyenvanba@yahoo.com.
Duy Bac NguyenVietnam Military Medical University, Ha Dong, Hanoi 100000, Vietnam. bac_hvqy@yahoo.com.
Bach Quang LeVietnam Military Medical University, Ha Dong, Hanoi 100000, Vietnam. lebachquangdiep@gmail.com.
Jing Hao WongDepartment of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, Kyoto 606-8507, Japan. jh-wong@ddm.med.kyoto-u.ac.jp.
Tatsuhiko TsunodaRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. tatsuhiko.tsunoda@riken.jp.
Hidewaki NakagawaRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. hidewaki@ims.u-tokyo.ac.jp.
Akihiro FujimotoRIKEN Center for Integrative Medical Sciences, Tokyo 108-8639, Japan. fujimoto@ddm.med.kyoto-u.ac.jp.
Van Hai NongInstitute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 100000, Vietnam. vhnong@igr.ac.vn.ORCID 0000-0003-2939-8430
RIKEN Center for Integrative Medical Sciences · JPVietnam Academy of Science and Technology · VNVietnam Military Medical University · VNKyoto University · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although it has been a half-century since dioxin-contaminated herbicides were used to defoliate the landscape during the Vietnam War, dioxin contamination "hotspots" still remain in Vietnam. Environmental and health impacts of these hotspots need to be evaluated. Intellectual disability (ID) is one of the diseases found in the children of people exposed to the herbicides. This study aims to identify genetic alterations of a patient whose family lived in a dioxin hotspot. The patient's father had a highly elevated dioxin concentration. He was affected with undiagnosed moderate ID. To analyze de novo mutations and genetic variations, and to identify causal gene(s) for ID, we performed whole genome sequencing (WGS) of the proband and his parents. Two de novo missense mutations were detected, each one in

Indexed as

DioxinsHerbicidesComputational BiologyEnvironmental ExposureFamilyFemaleGenetic VariationHumansIntellectual DisabilityMaleMutationVietnamWhole Genome SequencingDioxinsHerbicidesCENPFdioxinETS2intellectual disabilityZNF480

Identifiers

PMID30477169
PMCPMC6313569
OpenAlexW2901421648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.