Evidence map›Paper›PMID 30475796›Full record

ArticlePLoS computational biology2018

Binding of the general anesthetic sevoflurane to ion channels.

Letícia Stock, Juliana Hosoume, Leonardo Cirqueira, Werner Treptow

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Alchemical Free Energy Calculations on Membrane-Associated Proteins.Journal of chemical theory and computation · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Towards Quantum-Chemical Modeling of the Activity of Anesthetic Compounds.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Letícia StockLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília DF, Brasil.
Juliana HosoumeLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília DF, Brasil.ORCID 0000-0002-6020-8212
Leonardo CirqueiraLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília DF, Brasil.ORCID 0000-0001-7335-174X
Werner TreptowLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília DF, Brasil.ORCID 0000-0003-4564-3205
Universidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The direct-site hypothesis assumes general anesthetics bind ion channels to impact protein equilibrium and function, inducing anesthesia. Despite advancements in the field, a first principle all-atom demonstration of this structure-function premise is still missing. We focus on the clinically used sevoflurane interaction to anesthetic-sensitive Kv1.2 mammalian channel to resolve if sevoflurane binds protein's well-characterized open and closed structures in a conformation-dependent manner to shift channel equilibrium. We employ an innovative approach relying on extensive docking calculations and free-energy perturbation of all potential binding sites revealed by the latter, and find sevoflurane binds open and closed structures at multiple sites under complex saturation and concentration effects. Results point to a non-trivial interplay of site and conformation-dependent modes of action involving distinct binding sites that increase channel open-probability at diluted ligand concentrations. Given the challenge in exploring more complex processes potentially impacting channel-anesthetic interaction, the result is revealing as it demonstrates the process of multiple anesthetic binding events alone may account for open-probability shifts recorded in measurements.

Indexed as

AlgorithmsAnesthetics, GeneralAnesthetics, InhalationAnimalsBinding SitesComputational BiologyIon Channel GatingIon ChannelsKv1.2 Potassium ChannelLigandsMolecular ConformationMolecular Dynamics SimulationProbabilityProtein BindingProtein DomainsSevofluraneAnesthetics, GeneralAnesthetics, InhalationIon ChannelsKv1.2 Potassium ChannelLigandsSevoflurane

Identifiers

PMID30475796
PMCPMC6283617
OpenAlexW2902208641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.