Evidence map›Paper›PMID 30475611›Full record

ArticleJournal of the American Chemical Society2018

Enzyme Architecture: Breaking Down the Catalytic Cage that Activates Orotidine 5'-Monophosphate Decarboxylase for Catalysis.

Archie C Reyes, David C Plache, Astrid P Koudelka, Tina L Amyes, John A Gerlt, John P Richard

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Mechanisms of ligand binding.Biophysics reviews · 2020
    Review
  13. Article
  14. Article
  15. Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis.Journal of the American Chemical Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Archie C ReyesDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.ORCID 0000-0001-9955-393X
David C PlacheDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
Astrid P KoudelkaDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
Tina L AmyesDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.
John A GerltDepartment of Chemistry and Biochemistry , University of Illinois , Urbana , Illinois 61801 , United States.
John P RichardDepartment of Chemistry , University at Buffalo, SUNY , Buffalo , New York 14260-3000 , United States.ORCID 0000-0002-0440-2387

Funding

REACTIVE INTERMEDIATES OF ENZYMATIC REACTIONSR01GM039754 · NIGMS · UNIVERSITY OF KENTUCKY · PI RICHARD, JOHN P · 1993 to 2012
$3.9M
STRUCTURAL BASES FOR CATALYTIC EFFICIENCY AND SUBSTRATE SPECIFICITYR01GM065155 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GERLT, JOHN A · 2003 to 2011
$3.2M
Activation of Enzymes for Catalysis: The Role of Substrate-Induced Structural ChangesR01GM116921 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RICHARD, JOHN P · 2016 to 2019
$1.3M
NIGMS NIH HHS R01 GM039754NIGMS NIH HHS R01 GM065155NIGMS NIH HHS R01 GM116921
6 · The paper itself

Abstract

We report the results of a study of the catalytic role of a network of four interacting amino acid side chains at yeast orotidine 5'-monophosphate decarboxylase ( ScOMPDC), by the stepwise replacement of all four side chains. The H-bond, which links the -CH

Indexed as

ArginineBiocatalysisCatalytic DomainDecarboxylationGlutamineHydrogen BondingKineticsMutationOrotidine-5'-Phosphate DecarboxylaseProtein ConformationSaccharomyces cerevisiaeSerineThermodynamicsTyrosineUridine MonophosphateArginineGlutamineOrotidine-5'-Phosphate Decarboxylaseorotidylic acidSerineTyrosineUridine Monophosphate

Identifiers

PMID30475611
PMCPMC6317530

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.