Evidence map›Paper›PMID 30473425›Full record

ArticleDNA repair2019

NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast.

Amelia J Hodges, Dalton A Plummer, John J Wyrick

Abstract read
In one paragraph

Article in DNA repair, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Epigenetic Regulation of Nucleotide Excision Repair.Frontiers in cell and developmental biology · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Formation and Recognition of UV-Induced DNA Damage within Genome Complexity.International journal of molecular sciences · 2020
    Review
  13. Article
  14. Review
  15. Illuminating genome repair by photolyase.Photochemistry and photobiology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Amelia J HodgesSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, United States.
Dalton A PlummerSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, United States.
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, United States; Center for Reproductive Biology, Washington State University, Pullman, WA, 99164, United States. Electronic address: jwyrick@wsu.edu.
Washington State University · US

Funding

Regulation of DNA Excision Repair in ChromatinR01ES028698 · NIEHS · WASHINGTON STATE UNIVERSITY · PI John J Wyrick · 2018 to 2026
$2.7M
REPAIR OF CARCINOGEN-DAMAGED DNA IN HUMAN CHROMATINR01ES002614 · NIEHS · WASHINGTON STATE UNIVERSITY · PI SMERDON, MICHAEL J, WYRICK, JOHN J · 1985 to 2015
$2.5M
Genome-wide analysis of UV damage formation, repair, and mutagenesisR21ES027937 · NIEHS · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A, WYRICK, JOHN J · 2017 to 2018
$419k
NIEHS NIH HHS R01 ES002614NIEHS NIH HHS R01 ES028698NIEHS NIH HHS R21 ES027937
6 · The paper itself

Abstract

The nucleotide excision repair (NER) pathway is critical for removing damage induced by ultraviolet (UV) light and other helix-distorting lesions from cellular DNA. While efficient NER is critical to avoid cell death and mutagenesis, NER activity is inhibited in chromatin due to the association of lesion-containing DNA with histone proteins. Histone acetylation has emerged as an important mechanism for facilitating NER in chromatin, particularly acetylation catalyzed by the Spt-Ada-Gcn5 acetyltransferase (SAGA); however, it is not known if other histone acetyltransferases (HATs) promote NER activity in chromatin. Here, we report that the essential Nucleosome Acetyltransferase of histone H4 (NuA4) complex is required for efficient NER in Saccharomyces cerevisiae. Deletion of the non-essential Yng2 subunit of the NuA4 complex causes a general defect in repair of UV-induced cyclobutane pyrimidine dimers (CPDs) in yeast; in contrast, deletion of the Sas3 catalytic subunit of the NuA3 complex does not affect repair. Rapid depletion of the essential NuA4 catalytic subunit Esa1 using the anchor-away method also causes a defect in NER, particularly at the heterochromatic HML locus. We show that disrupting the Sds3 subunit of the Rpd3L histone deacetylase (HDAC) complex rescued the repair defect associated with loss of Esa1 activity, suggesting that NuA4-catalyzed acetylation is important for efficient NER in heterochromatin.

Indexed as

DNA RepairDNA HelicasesGene DeletionGenetic LociGenomicsHistone AcetyltransferasesMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUltraviolet RaysDNA HelicasesHistone AcetyltransferasesNuA4 protein, S cerevisiaeRad3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsAcetylationChromatinDNA repairEsa1HistoneNER

Identifiers

PMID30473425
PMCPMC6312484
OpenAlexW2901834665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.