Evidence map›Paper›PMID 30473013›Full record

ArticleNeuron2018

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish.

Xiuye Chen, Yu Mu, Yu Hu, Aaron T Kuan, Maxim Nikitchenko, Owen Randlett, Alex B Chen, Jeffery P Gavornik, Haim Sompolinsky, Florian Engert and 1 more

Abstract read
In one paragraph

Article in Neuron, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 231 citations in OpenAlex.

  1. Article
  2. Article
  3. Heart rate control by listening to light.Nature communications · 2026
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  5. Article
  6. Neural circuits for decision-making based on pineal photoreception in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
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  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. On analogies in vertebrate and insect visual systems.Nature reviews. Neuroscience · 2025
    Review
  19. Article
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Xiuye ChenHarvard University, Molecular and Cellular Biology, Cambridge, MA, 02138, USA; Harvard University, Center for Brain Science, Cambridge, MA, 02138, USA; Boston University, Department of Biology, Boston, MA, 02115, USA. Electronic address: xiuyechen@gmail.com.
Yu MuJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Yu HuHarvard University, Center for Brain Science, Cambridge, MA, 02138, USA; Hebrew University, The Edmond and Lily Safra Center for Brain Sciences, Jerusalem, Israel.
Aaron T KuanHarvard Medical School, Department of Neurobiology, Boston, MA, 02115, USA.
Maxim NikitchenkoHarvard University, Center for Brain Science, Cambridge, MA, 02138, USA.
Owen RandlettHarvard University, Center for Brain Science, Cambridge, MA, 02138, USA.
Alex B ChenJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.
Jeffery P GavornikBoston University, Department of Biology, Boston, MA, 02115, USA.
Haim SompolinskyHarvard University, Center for Brain Science, Cambridge, MA, 02138, USA; Hebrew University, The Edmond and Lily Safra Center for Brain Sciences, Jerusalem, Israel.
Florian EngertHarvard University, Molecular and Cellular Biology, Cambridge, MA, 02138, USA; Harvard University, Center for Brain Science, Cambridge, MA, 02138, USA.
Misha B AhrensJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA. Electronic address: ahrensm@janelia.hhmi.org.
Harvard University · USHoward Hughes Medical Institute · USBoston University · USJanelia Research Campus · US

Funding

Zooming into the fish's brain-What is really going on! Connectomics analysis of larval zebrafish.U19NS104653 · NINDS · HARVARD UNIVERSITY · PI Randal Burns, Florian Engert · 2017 to 2026
$39.4M
Neural circuits in zebrafish: form, function and plasticityU01NS090449 · NINDS · HARVARD UNIVERSITY · PI CEPKO, CONSTANCE L, ENGERT, FLORIAN · 2014 to 2016
$5.2M
Howard Hughes Medical InstituteNINDS NIH HHS U01 NS090449NINDS NIH HHS U19 NS104653
6 · The paper itself

Abstract

Simultaneous recordings of large populations of neurons in behaving animals allow detailed observation of high-dimensional, complex brain activity. However, experimental approaches often focus on singular behavioral paradigms or brain areas. Here, we recorded whole-brain neuronal activity of larval zebrafish presented with a battery of visual stimuli while recording fictive motor output. We identified neurons tuned to each stimulus type and motor output and discovered groups of neurons in the anterior hindbrain that respond to different stimuli eliciting similar behavioral responses. These convergent sensorimotor representations were only weakly correlated to instantaneous motor activity, suggesting that they critically inform, but do not directly generate, behavioral choices. To catalog brain-wide activity beyond explicit sensorimotor processing, we developed an unsupervised clustering technique that organizes neurons into functional groups. These analyses enabled a broad overview of the functional organization of the brain and revealed numerous brain nuclei whose neurons exhibit concerted activity patterns.

Indexed as

AnimalsAnimals, Genetically ModifiedBrainBrain ChemistryLarvaMotor ActivityNeuronsOptogeneticsPhotic StimulationPsychomotor PerformanceZebrafish

Identifiers

PMID30473013
PMCPMC6543271
OpenAlexW2953308498

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.