Evidence map›Paper›PMID 30471716›Full record

ArticleAmerican journal of human genetics2018

MACF1 Mutations Encoding Highly Conserved Zinc-Binding Residues of the GAR Domain Cause Defects in Neuronal Migration and Axon Guidance.

William B Dobyns, Kimberly A Aldinger, Gisele E Ishak, Ghayda M Mirzaa, Andrew E Timms, Megan E Grout, Marjolein H G Dremmen, Rachel Schot, Laura Vandervore, Marjon A van Slegtenhorst and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 2 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 2 syntheses or guidelines pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. 선천성 뇌 질환의 영상 소견: 임상 화보.Journal of the Korean Society of Radiology · 2026
    Review
  6. Article
  7. A clinical and genotype-phenotype analysis of MACF1 variants.American journal of human genetics · 2025
    Article
  8. Comprehensive characterization of the RNA editing landscape in the human aging brains with Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  9. Domain specific phenotypic expansion associated with variants inmedRxiv : the preprint server for health sciences · 2025
    Article
  10. Identification ofJournal of medical genetics · 2025
    Article
  11. Review
  12. Expanding the genetics and phenotypes of ocular congenital cranial dysinnervation disorders.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  13. A Multifaceted Giant Protein Microtubule-Actin Cross-Linking Factor 1.International journal of molecular sciences · 2025
    Review
  14. Review
  15. Review
  16. Article
  17. A missense mutation in theJournal of medicine and life · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 14 institutions in 5 countries.

William B DobynsDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Department of Neurology, University of Washington, Seattle, WA 98195, USA; Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA. Electronic address: wbd@uw.edu.
Kimberly A AldingerCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Gisele E IshakCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Radiology, University of Washington, Seattle, WA 98195, USA.
Ghayda M MirzaaDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Andrew E TimmsCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Megan E GroutDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Marjolein H G DremmenDepartment of Radiology, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands; Division of Pediatric Radiology, Sophia Children's Hospital, Rotterdam 3015 CN, the Netherlands.
Rachel SchotDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Laura VandervoreDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Marjon A van SlegtenhorstDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Martina WilkeDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Esmee KasteleijnDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Arthur S LeeDepartment of Neurology, Children's Hospital Boston and Harvard Medical School, Boston, MA 02115, USA; Center for Mendelian Genomics at the Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Brenda J BarryDepartment of Neurology, Children's Hospital Boston and Harvard Medical School, Boston, MA 02115, USA.
Katherine R ChaoCenter for Mendelian Genomics at the Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Krzysztof SzczałubaDepartment of Medical Genetics, Medical University of Warsaw, Warsaw 02-106, Poland.
Joyce KoboriDepartment of Genetics, Permanente Medical Group, San Jose, CA 95123, USA.
Andrea Hanson-KahnDepartment of Genetics, Stanford School of Medicine, Stanford, CA 94305, USA; Department of Pediatrics, Stanford School of Medicine, Stanford, CA 94305, USA.
Jonathan A BernsteinDepartment of Pediatrics, Stanford School of Medicine, Stanford, CA 94305, USA.
Lucinda CarrDepartment of Neuroradiology, Great Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Felice D'ArcoDepartment of Neuroradiology, Great Ormond Street Hospital for Children NHS Foundation Trust, London WC1N 3JH, UK.
Kaori MiyanaDepartment of Pediatrics, Japanese Red Cross Medical Center, Shibuya, Tokyo, Japan.
Tetsuya OkazakiDivision of Child Neurology, Department of Brain and Neurosciences, Faculty of Medicine, Tottori University, Yonago, Tottori, Japan.
Yoshiaki SaitoDivision of Child Neurology, Department of Brain and Neurosciences, Faculty of Medicine, Tottori University, Yonago, Tottori, Japan.
Masayuki SasakiDepartment of Child Neurology, National Center Hospital, National Center of Neurology and Psychiatry, Tokyo, Japan.
Soma DasDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Marsha M WheelerDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA; University of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
Michael J BamshadDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; University of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA; University of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
University of Washington Center for Mendelian GenomicsUniversity of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
Center for Mendelian Genomics at the Broad Institute of MIT and HarvardCenter for Mendelian Genomics at the Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Elizabeth C EngleDepartment of Neurology, Children's Hospital Boston and Harvard Medical School, Boston, MA 02115, USA; Center for Mendelian Genomics at the Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Department Ophthalmology, Children's Hospital Boston and Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Frans W VerheijenDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands.
Dan DohertyDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Grazia M S ManciniDepartment of Clinical Genetics, Erasmus MC University Medical Center, Rotterdam 3015 CN, the Netherlands. Electronic address: g.mancini@erasmusmc.nl.
Erasmus MC · NLUniversity of Washington · USHarvard University · USWashington Center · USGreat Ormond Street Hospital for Children NHS Foundation Trust · GBStanford Medicine · USTottori University · JPBroad Institute · USColorado Permanente Medical Group · USJapanese Red Cross Medical Center · JPMedical University of Warsaw · PLNational Center of Neurology and Psychiatry · JPSeattle Children's Hospital · USUniversity of Chicago · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
De novo copy number variation and gene discovery in human brain malformationsR01NS058721 · NINDS · UNIVERSITY OF CHICAGO · PI ARGILLI, EMANUELA · 2008 to 2025
$10.9M
The Genetic Basis of Mid-Hindbrain MalformationsR01NS050375 · NINDS · UNIVERSITY OF MINNESOTA · PI DOBYNS, WILLIAM B. · 2005 to 2019
$9.9M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI DOHERTY, DANIEL · 2014 to 2019
$7.9M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI POMEROY, SCOTT LOREN · 2016 to 2020
$5.2M
Megalencephaly and segmental brain overgrowth in humansR01NS092772 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MILLEN, KATHLEEN JOYCE · 2015 to 2019
$3.3M
Dissecting ocular congenital cranial dysinnervation disorders through whole genome sequence analysisR01EY027421 · NEI · BOSTON CHILDREN'S HOSPITAL · PI ENGLE, ELIZABETH C. · 2017 to 2021
$3.1M
Genes and pathways underlying brain overgrowth and focal cortical malformationsK08NS092898 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MIRZAA, GHAYDA · 2015 to 2019
$930k
NEI NIH HHS R01 EY027421NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NHGRI NIH HHS UM1 HG008900NICHD NIH HHS U54 HD083091NICHD NIH HHS U54 HD090255NINDS NIH HHS K08 NS092898NINDS NIH HHS R01 NS050375NINDS NIH HHS R01 NS058721NINDS NIH HHS R01 NS092772
6 · The paper itself

Abstract

To date, mutations in 15 actin- or microtubule-associated genes have been associated with the cortical malformation lissencephaly and variable brainstem hypoplasia. During a multicenter review, we recognized a rare lissencephaly variant with a complex brainstem malformation in three unrelated children. We searched our large brain-malformation databases and found another five children with this malformation (as well as one with a less severe variant), analyzed available whole-exome or -genome sequencing data, and tested ciliogenesis in two affected individuals. The brain malformation comprised posterior predominant lissencephaly and midline crossing defects consisting of absent anterior commissure and a striking W-shaped brainstem malformation caused by small or absent pontine crossing fibers. We discovered heterozygous de novo missense variants or an in-frame deletion involving highly conserved zinc-binding residues within the GAR domain of MACF1 in the first eight subjects. We studied cilium formation and found a higher proportion of mutant cells with short cilia than of control cells with short cilia. A ninth child had similar lissencephaly but only subtle brainstem dysplasia associated with a heterozygous de novo missense variant in the spectrin repeat domain of MACF1. Thus, we report variants of the microtubule-binding GAR domain of MACF1 as the cause of a distinctive and most likely pathognomonic brain malformation. A gain-of-function or dominant-negative mechanism appears likely given that many heterozygous mutations leading to protein truncation are included in the ExAC Browser. However, three de novo variants in MACF1 have been observed in large schizophrenia cohorts.

Indexed as

AdolescentAxon GuidanceBrain StemCell MovementChildChild, PreschoolCiliaConserved SequenceFemaleHumansLissencephalyMaleMicrofilament ProteinsMicrotubulesMutationNervous System MalformationsMACF1 protein, humanMicrofilament ProteinsZincACF7actinaxonal pathfindingbrainstem hypoplasiaciliacytoskeletonlissencephalyMACF1microtubulesmidline crossing

Identifiers

PMID30471716
PMCPMC6288423
OpenAlexW2900777844

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Textmetadata
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.