Evidence map›Paper›PMID 30470899›Full record

ArticlePlanta2019

Engineering modular diterpene biosynthetic pathways in Physcomitrella patens.

Aparajita Banerjee, Jonathan A Arnesen, Daniel Moser, Balindile B Motsa, Sean R Johnson, Bjoern Hamberger

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Aparajita BanerjeeBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Jonathan A ArnesenBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Daniel MoserBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Balindile B MotsaBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Sean R JohnsonBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Bjoern HambergerBiochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA. hamberge@msu.edu.ORCID http://orcid.org/0000-0003-1249-1807
Michigan State University · USEnergy Center of Wisconsin · USHeinrich Heine University Düsseldorf · DE

Funding

Agricultural Research Service MICL02454Directorate for Biological Sciences 1737898U.S. Department of Energy DE-FC02-07ER64494U.S. Department of Energy DE-SC0018409
6 · The paper itself

Abstract

MAIN

conclusionModular assembly and heterologous expression in the moss Physcomitrella patens of pairs of diterpene synthases results in accumulation of modern land plant diterpenoids. Physcomitrella patens is a representative of the ancient bryophyte plant lineage with a genome size of 511 Mb, dominant haploid life cycle and limited chemical and metabolic complexity. For these plants, exceptional capacity for genome editing through homologous recombination is met with recently demonstrated in vivo assembly of multiple heterologous DNA fragments. These traits earlier made P. patens an attractive choice as a biotechnological chassis for photosynthesis-driven production of recombinant peptides. The lack of diterpene gibberellic acid phytohormones in P. patens combined with the recent targeted disruption of the single bifunctional diterpene synthase yielded lines devoid of endogenous diterpenoid metabolites and well-suited for engineering of terpenoid production. Here, we mimicked the modular nature of diterpene biosynthetic pathways found in modern land plants by developing a flexible pipeline to install three combinations of class II and class I diterpene synthases in P. patens to access industrially relevant diterpene biomaterials. In addition to a well-established neutral locus for targeted integration, we also explored loci created by a class of Long Terminal Repeat Retrotransposon present at moderate number in the genome of P. patens. Assembly of the pathways and production of the enzymes from the neutral locus led to accumulation of diterpenes matching the reported activities in the angiosperm sources. In contrast, insights gained with the retrotransposon loci indicate their suitability for targeting, but reveal potentially inherent complications which may require adaptation of the experimental design.

Indexed as

BiotechnologyBryopsidaDiterpenesGibberellinsLife Cycle StagesPhotosynthesisPlant Growth RegulatorsRetroelementsSynthetic BiologyDiterpenesgibberellic acidGibberellinsPlant Growth RegulatorsRetroelementsDiterpenoidsHomologous recombinationNeutral locusPhotosynthetic productionRetrotransposonSynthetic biology

Identifiers

PMID30470899
OpenAlexW2900504442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.