Evidence map›Paper›PMID 30470857›Full record

ArticleInflammation research : official journal of the European Histamine Research Society ... [et al.]2019

An association study in PTPN22 suggests that is a risk factor to Takayasu's arteritis.

María Elena Soto, Isela Montufar-Robles, Silvia Jiménez-Morales, Ricardo Gamboa, Claudia Huesca-Gómez, Julian Ramírez-Bello

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In one paragraph

Article in Inflammation research : official journal of the European Histamine Research Society ... [et al.], 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

María Elena SotoDepartamento de Inmunología, Instituto Nacional de Cardiología "Ignacio Chávez", Mexico City, Mexico.
Isela Montufar-RoblesUnidad de Investigación en Enfermedades Metabólicas y Endócrinas, Hospital Juárez de México, Av. Instituto Politécnico Nacional No. 5160, Delegación Gustavo A. Madero, C.P. 07760, Mexico City, DF, Mexico.
Silvia Jiménez-MoralesLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Ricardo GamboaDepartamento de Fisiología, Instituto Nacional de Cardiología "Ignacio Chávez", Mexico City, Mexico.
Claudia Huesca-GómezDepartamento de Fisiología, Instituto Nacional de Cardiología "Ignacio Chávez", Mexico City, Mexico.
Julian Ramírez-BelloUnidad de Investigación en Enfermedades Metabólicas y Endócrinas, Hospital Juárez de México, Av. Instituto Politécnico Nacional No. 5160, Delegación Gustavo A. Madero, C.P. 07760, Mexico City, DF, Mexico. dr.julian.ramirez.hjm@gmail.com.ORCID http://orcid.org/0000-0002-4153-9315
Instituto Nacional de Cardiología · MXHospital Juárez de México · MXNational Institute of Genomic Medicine · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTakayasu's arteritis (TA) represents a rare autoimmune disease (AD) characterized by systemic vasculitis that primarily affects large arteries, especially the aorta and the aortic arch and its main branches. Genetic components in TA are largely unknown. PTPN22 is a susceptibility loci for different ADs; however, the role of different PTPN22 single-nucleotide polymorphisms (SNPs) in the susceptibility to TA is not clear.

methodsWe evaluated the PTPN22 R620W (C1858T), R263Q (G788A), and - 123G/C SNPs in a group of patients with TA and in healthy individuals from Mexico. Our study included 111 patients with TA and 314 healthy individuals. Genotyping was performed with the 5' exonuclease (TaqMan

resultsOur data showed that the PTPN22 R620W polymorphism is a risk factor for TA (CC vs. CT: OR 4.3, p = 0.002, and C vs. T: OR 4.1, p = 0.003); however, the PTPN22 R263Q and - 1123G/C polymorphisms are not associated with this AD. In addition, the PTPN22 CGT haplotype, which carries the minor allele of the PTPN22 C1858T variant, was also associated with TA susceptibility.

conclusionThis is the first report documenting an association between PTPN22 R620W and TA.

Indexed as

AdultFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMexicoMiddle AgedPolymorphism, Single NucleotideProtein Tyrosine Phosphatase, Non-Receptor Type 22Risk FactorsTakayasu ArteritisProtein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanPTPN22R620WSingle nucleotide polymorphismSusceptibilityTakayasu’s arteritis

Identifiers

PMID30470857
OpenAlexW2900704292

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.