Evidence map›Paper›PMID 30467716›Full record

ArticleCurrent genetics2019

Co-evolution of spliceosomal disassembly interologs: crowning J-protein component with moonlighting RNA-binding activity.

S Raut, K Yadav, A K Verma, Y Tak, P Waiker, C Sahi

Abstract read
PubMed Publisher
In one paragraph

Article in Current genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. ACS omega · 2024
    Article
  6. Dysfunction of Gpl1-Gih35-Wdr83 Complex inInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. The expanding world of plant J-domain proteins.Critical reviews in plant sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

S RautChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India.
K YadavChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India.
A K VermaChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India.
Y TakChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India.
P WaikerChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India.
C SahiChaperone and Stress Biology Lab, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Bhopal, Room Number 117, AB3, Bhopal Bypass Road, Bhauri, Bhopal, Madhya Pradesh, 462066, India. sahi@iiserb.ac.in.
Indian Institute of Science Education and Research, Bhopal · IN

Funding

Department of Biotechnology, Ministry of Science and Technology BT/PR12149/BRB/10/1348/2014
6 · The paper itself

Abstract

Spliceosome disassembly is catalyzed by the NineTeen-related (NTR) complex, which is constituted by several proteins, including Cwc23, Ntr1, and Ppr43. Cwc23 is an essential J-protein in Saccharomyces cerevisiae that recruits Ntr1, an NTC-related G-patch protein, to the spliceosome. Ntr1 interacts with Prp43, a DExD/H box RNA helicase protein, which facilitates the disassembly of spliceosomal intermediates. The interaction between Ntr1 and Prp43 is conserved and crucial for the disassembly process. However, the J-protein component of this complex is not studied in other eukaryotes. In silico analysis supported by results of yeast complementation and two-hybrid studies suggests that while Prp43 is highly conserved, both Ntr1 and Cwc23 are co-evolving components of the disassembly triad. The J-domain of Cwc23, which is otherwise dispensable for its function, is highly conserved, whereas the functionally critical C-terminus has significantly diverged in Cwc23 orthologs. Some eukaryotic orthologs of Cwc23 contain a distinct RNA recognition motif at their C-terminus and are able to bind RNA in vitro. Based on the results presented in this study, we propose that RNA-binding activity in some eukaryotic orthologs of Cwc23 might provide additional functional diversity or robustness to the J-protein/Hsp70 machine in spliceosomal remodelling processes.

Indexed as

Biological EvolutionComputational BiologyDatabases, GeneticModels, MolecularMultiprotein ComplexesProtein BindingProtein ConformationRNARNA SplicingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpliceosomesStructure-Activity RelationshipMultiprotein ComplexesRNASaccharomyces cerevisiae ProteinsCo-evolutionJ-proteinsK. lactisRRMS. cerevisiaeSpliceosomeS. pombe

Identifiers

PMID30467716
OpenAlexW2901880628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.