Evidence map›Paper›PMID 30467024›Full record

ArticleBiophysical journal2018

Unraveling the Control of Cell Cycle Periods during Intestinal Stem Cell Differentiation.

Richard Ballweg, Suengwon Lee, Xiaonan Han, Philip K Maini, Helen Byrne, Christian I Hong, Tongli Zhang

Abstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cell cycle expression heterogeneity predicts degree of differentiation.bioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Richard BallwegDepartment of Pharmacology and Systems Physiology, College of Medicine, University of Cincinnati, Cincinnati, Ohio.
Suengwon LeeDepartment of Pharmacology and Systems Physiology, College of Medicine, University of Cincinnati, Cincinnati, Ohio.
Xiaonan HanDivision of Gastroenterology, Hepatology, and Nutrition, Cincinnati Children's Hospital, Cincinnati, Ohio; Key Laboratory of Human Disease Comparative Medicine, Health Ministry, Beijing, China; Institute of Laboratory Animal Science, Chinese Academy of Medical Science and Peking Union Medical College, Beijing, China.
Philip K MainiWolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom.
Helen ByrneWolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom.
Christian I HongDepartment of Pharmacology and Systems Physiology, College of Medicine, University of Cincinnati, Cincinnati, Ohio; Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Center for Stem Cell and Organoid Medicine, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Tongli ZhangDepartment of Pharmacology and Systems Physiology, College of Medicine, University of Cincinnati, Cincinnati, Ohio. Electronic address: tongli.zhang@uc.edu.

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Roles of circadian rhythms in gastrointestinal systemsR01DK117005 · NIDDK · UNIVERSITY OF CINCINNATI · PI HONG, CHRISTIAN I · 2018 to 2022
$1.8M
Regulation of adult stem cell homeostatic response to inflammatory injuryR21AI103388 · NIAID · CINCINNATI CHILDRENS HOSP MED CTR · PI HAN, XIAONAN · 2013 to 2014
$423k
(PQ6) Roles of circadian rhythms in tumor developmentR21CA227379 · NCI · UNIVERSITY OF CINCINNATI · PI HONG, CHRISTIAN I · 2018 to 2019
$378k
NCI NIH HHS R21 CA227379NIDDK NIH HHS P30 DK078392NIDDK NIH HHS R01 DK117005
6 · The paper itself

Abstract

During differentiation, intestinal stem cells (ISCs), a prototypical adult stem cell pool, become either secretory transit-amplifying cells, which give rise to all secretory cell types, or absorptive transit-amplifying cells, which give rise to enterocytes. These cells exhibit distinct cell cycle dynamics: ISCs cycle with a period of 24 h and absorptive transit-amplifying cells cycle with a period of ∼12 h, whereas secretory transit-amplifying cells arrest their cycle. The cell cycle dynamics of ISCs and their progeny are a systems-level property that emerges from interactions between the cell cycle control machinery and multiple regulatory pathways. Although many mathematical models have been developed to study the details of the cell cycle and related regulatory pathways, few models have been constructed to unravel the dynamic consequences of their interactions. To fill this gap, we present a simplified model focusing on the interaction between four key regulatory pathways (STAT, Wnt, Notch, and MAPK) and cell cycle control. After experimentally validating a model prediction, which showed that the Notch pathway can fine-tune the cell cycle period, we perform further model analysis that reveals that the change of cell cycle period accompanying ISC differentiation may be controlled by a design principle that has been well studied in dynamical systems theory-a saddle node on invariant circle bifurcation. Given that the mechanisms that control the cell cycle are conserved in most eukaryotic cell types, this general principle potentially controls the interplay between proliferation and differentiation for a broad range of stem cells.

Indexed as

Cell CycleCell DifferentiationModels, TheoreticalBasic Helix-Loop-Helix ProteinsCell ProliferationCells, CulturedHumansIntestinesReceptors, NotchSignal TransductionSTAT Transcription FactorsStem CellsATOH1 protein, humanBasic Helix-Loop-Helix ProteinsReceptors, NotchSTAT Transcription Factors

Identifiers

PMID30467024
PMCPMC6289095

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.