Evidence map›Paper›PMID 30465796›Full record

ArticleJournal of neuroscience methods2019

Mass synaptometry: High-dimensional multi parametric assay for single synapses.

Chandresh R Gajera, Rosemary Fernandez, Nadia Postupna, Kathleen S Montine, Edward J Fox, Dmitry Tebaykin, Michael Angelo, Sean C Bendall, C Dirk Keene, Thomas J Montine

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  7. Vesicular Glutamate Release from Feeder-FreehiPSC-Derived Neurons.International journal of molecular sciences · 2022
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  13. Mass-tag barcoding for multiplexed analysis of human synaptosomes and other anuclear events.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Chandresh R GajeraDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Rosemary FernandezDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Nadia PostupnaDepartment of Pathology, University of Washington, Seattle, WA, United States.
Kathleen S MontineDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Edward J FoxDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Dmitry TebaykinDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Michael AngeloDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
Sean C BendallDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States.
C Dirk KeeneDepartment of Pathology, University of Washington, Seattle, WA, United States.
Thomas J MontineDepartment of Pathology, Stanford University Medical Center, Stanford, CA, United States. Electronic address: tmontine@stanford.edu.
Stanford Medicine · USUniversity of Washington · US

Funding

THERAPEUTIC EFFECTS OF INTRA-NASAL INSULIN DETEMIRP50AG005136 · NIA · UNIVERSITY OF WASHINGTON · PI GRABOWSKI, THOMAS J. · 1985 to 2019
$57.2M
Udall Center Director's meeting poster awardP50NS062684 · NINDS · UNIVERSITY OF WASHINGTON · PI MONTINE, THOMAS J · 2009 to 2020
$18.3M
Working Memory in Parkinson Disease: A Cognitive & Systems Neuroscience ApproachP50AG047366 · NIA · STANFORD UNIVERSITY · PI HENDERSON, VICTOR · 2015 to 2019
$7.9M
MIRIAD - Multiplexed Imaging of Resilience In Alzheimers DiseaseR01AG057915 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$4.5M
Molecular Phenotyping in Alzheimer's DiseaseRF1AG053959 · NIA · STANFORD UNIVERSITY · PI LARSON, ERIC B, MACCOSS, MICHAEL · 2016 to 2017
$4.1M
The Phenotypic Landscape of Cognitive Decline as Revealed by Next-Generation Multiplexed Ion Beam ImagingR01AG056287 · NIA · STANFORD UNIVERSITY · PI ANGELO, ROBERT MICHAEL, BENDALL, SEAN CURTIS · 2017 to 2021
$2.6M
Origins of human blood lineages in regenerative medicineDP2EB024246 · NIBIB · STANFORD UNIVERSITY · PI BENDALL, SEAN CURTIS · 2016 to 2016
$2.4M
NIA NIH HHS P50 AG005136NIA NIH HHS P50 AG047366NIA NIH HHS R01 AG056287NIA NIH HHS R01 AG057915NIA NIH HHS RF1 AG053959NIBIB NIH HHS DP2 EB024246NINDS NIH HHS P50 NS062684
6 · The paper itself

Abstract

backgroundSynaptic alterations, especially presynaptic changes, are cardinal features of neurodegenerative diseases and strongly correlate with cognitive decline. NEW

methodWe report "Mass Synaptometry" for the high-dimensional analysis of individual human synaptosomes, enriched nerve terminals from brain. This method was adapted from cytometry by time-of-flight mass spectrometry (CyTOF), which is commonly used for single-cell analysis of immune and blood cells.

resultHere we overcome challenges for single synapse analysis by optimizing synaptosome preparations, generating a 'SynTOF panel,' recalibrating acquisition settings, and applying computational analyses. Through the analysis of 390,000 individual synaptosomes, we also provide proof-of principle validation by characterizing changes in synaptic diversity in Lewy Body Disease (LBD), Alzheimer's disease and normal brain. COMPARISON WITH EXISTING METHOD(S): Current imaging methods to study synapses in humans are capable of analyzing a limited number of synapses, and conventional flow cytometric techniques are typically restricted to fewer than 6 parameters. Our method allows for the simultaneous detection of 34 parameters from tens of thousands of individual synapses.

conclusionWe applied Mass Synaptometry to analyze 34 parameters simultaneously on more than 390,000 synaptosomes from 13 human brain samples. This new approach revealed regional and disease-specific changes in synaptic phenotypes, including validation of this method with the expected changes in the molecular composition of striatal dopaminergic synapses in Lewy body disease and Alzheimer's disease. Mass synaptometry enables highly parallel molecular profiling of individual synaptic terminals.

Indexed as

Alzheimer DiseaseBrainComputational BiologyHumansLewy Body DiseaseMass SpectrometrySingle-Cell AnalysisSynapsesSynaptosomesAlzheimer's diseaseCyTOFMass cytometryParkinson's diseaseSynapse

Identifiers

PMID30465796
PMCPMC6363340
OpenAlexW2901703992

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.