Evidence map›Paper›PMID 30464338›Full record

ArticleNature2018

Somatic APP gene recombination in Alzheimer's disease and normal neurons.

Ming-Hsiang Lee, Benjamin Siddoway, Gwendolyn E Kaeser, Igor Segota, Richard Rivera, William J Romanow, Christine S Liu, Chris Park, Grace Kennedy, Tao Long and 1 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 216 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Inhibition of amyloid beta oligomer accumulation by NU-9: A unifying mechanism for the treatment of neurodegenerative diseases.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. The genetic landscape of early-onset Alzheimer's disease in China.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  10. Article
  11. Somatic Mosaicism in Brain Disorders.Annual review of pathology · 2025
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Alzheimer-Type Cerebral Amyloidosis in the Context of HIV Infection: Implications for a Proposed New Treatment Approach.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2024
    Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ming-Hsiang LeeSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Benjamin SiddowaySanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Gwendolyn E KaeserSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Igor SegotaSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Richard RiveraSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
William J RomanowSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Christine S LiuSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Chris ParkSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Grace KennedySanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Tao LongSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
Jerold ChunSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA. jchun@sbpdiscovery.org.
Discovery Institute · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

VIRUS-INDUCED BRAIN PATHOLOGYP50AG005131 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BREWER, JAMES B · 1985 to 2018
$55.4M
GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
TRAINING IN THE NEUROPLASTICITY OF AGINGT32AG000216 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOO, EDWARD H. · 1992 to 2017
$8.4M
NIA NIH HHS P50 AG005131NIA NIH HHS T32 AG000216NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

The diversity and complexity of the human brain are widely assumed to be encoded within a constant genome. Somatic gene recombination, which changes germline DNA sequences to increase molecular diversity, could theoretically alter this code but has not been documented in the brain, to our knowledge. Here we describe recombination of the Alzheimer's disease-related gene APP, which encodes amyloid precursor protein, in human neurons, occurring mosaically as thousands of variant 'genomic cDNAs' (gencDNAs). gencDNAs lacked introns and ranged from full-length cDNA copies of expressed, brain-specific RNA splice variants to myriad smaller forms that contained intra-exonic junctions, insertions, deletions, and/or single nucleotide variations. DNA in situ hybridization identified gencDNAs within single neurons that were distinct from wild-type loci and absent from non-neuronal cells. Mechanistic studies supported neuronal 'retro-insertion' of RNA to produce gencDNAs; this process involved transcription, DNA breaks, reverse transcriptase activity, and age. Neurons from individuals with sporadic Alzheimer's disease showed increased gencDNA diversity, including eleven mutations known to be associated with familial Alzheimer's disease that were absent from healthy neurons. Neuronal gene recombination may allow 'recording' of neural activity for selective 'playback' of preferred gene variants whose expression bypasses splicing; this has implications for cellular diversity, learning and memory, plasticity, and diseases of the human brain.

Indexed as

Recombination, GeneticAlternative SplicingAlzheimer DiseaseAmyloid beta-Protein PrecursorAnimalsDNA, ComplementaryDNA-Directed DNA PolymeraseExonsFemaleGenetic VariationHumansIntronsMaleMiceMice, TransgenicNeuronsAmyloid beta-Protein PrecursorDNA, ComplementaryDNA-Directed DNA PolymeraseRNA, Messenger

Identifiers

PMID30464338
PMCPMC6391999
OpenAlexW2901502534

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.